Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_N04
         (923 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084158-33|AAK68575.1|   83|Caenorhabditis elegans Hypothetical...    30   2.0  
Z46933-2|CAA87035.1|  101|Caenorhabditis elegans Hypothetical pr...    30   2.7  
Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical p...    29   3.6  
U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.       29   3.6  
U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.       29   3.6  
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    28   8.2  
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    28   8.2  
AC006790-10|AAF60736.1|  371|Caenorhabditis elegans Collagen pro...    28   8.2  

>AC084158-33|AAK68575.1|   83|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.3 protein.
          Length = 83

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 32  EFLKIXKYQMPHATFTLNKNEIV-PCY 109
           E+LK  KY   HA  T+NK+ +V P Y
Sbjct: 46  EYLKFDKYSYAHAEITMNKDRVVQPSY 72


>Z46933-2|CAA87035.1|  101|Caenorhabditis elegans Hypothetical
           protein F34H10.2 protein.
          Length = 101

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = -2

Query: 355 YWLNLT----YTTLRTGSQLLVSRAWSRLYPL 272
           YW+N      Y   RT S+  VS+ W RLYPL
Sbjct: 41  YWVNRAMPNKYRKYRTYSRRSVSQRWKRLYPL 72


>Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical
           protein C50H2.3 protein.
          Length = 838

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = +3

Query: 357 CRGQTGINRATISTNYDSGTAVCSGLAECTRASPVWSTFDAMADELLDPCLSTLGRSPNF 536
           CRG++      I + YD+ T +C      TRA   W  FD       + C++   +   +
Sbjct: 363 CRGRS----RNIFSEYDTCTTMCEETNVLTRAEVCWDKFDM---NYRNQCMNGQWQQRYY 415

Query: 537 LPHCA---RKFPFGKCQS 581
             H +   R+F F  C+S
Sbjct: 416 FDHASLTCRQFWFDGCRS 433


>U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = +3

Query: 357 CRGQTGINRATISTNYDSGTAVCSGLAECTRASPVWSTFDAMADELLDPCLSTLGRSPNF 536
           CRG++      I + YD+ T +C      TRA   W  FD       + C++   +   +
Sbjct: 363 CRGRS----RNIFSEYDTCTTMCEETNVLTRAEVCWDKFDM---NYRNQCMNGQWQQRYY 415

Query: 537 LPHCA---RKFPFGKCQS 581
             H +   R+F F  C+S
Sbjct: 416 FDHASLTCRQFWFDGCRS 433


>U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = +3

Query: 357 CRGQTGINRATISTNYDSGTAVCSGLAECTRASPVWSTFDAMADELLDPCLSTLGRSPNF 536
           CRG++      I + YD+ T +C      TRA   W  FD       + C++   +   +
Sbjct: 363 CRGRS----RNIFSEYDTCTTMCEETNVLTRAEVCWDKFDM---NYRNQCMNGQWQQRYY 415

Query: 537 LPHCA---RKFPFGKCQS 581
             H +   R+F F  C+S
Sbjct: 416 FDHASLTCRQFWFDGCRS 433


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = -3

Query: 282 CTHCAFFLSESTLKQSCYHRITEDL*FNNSLLFRTIHEIILCNIYIF 142
           C  C   +    +   C+H  T D    N     T  ++++ NIY F
Sbjct: 272 CKDCNEMMETGDIGVECHHHSTTDTYHPNCFRCETCRQLLVDNIYFF 318


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 474 DAMADELLDPCLSTLGRSPNFLPHCARKFPFGKCQSPM 587
           D+    +++  LS L     F PHCA      KC +P+
Sbjct: 768 DSFQPYMIESVLSKLPPKCGFSPHCANYLVLKKCATPL 805


>AC006790-10|AAF60736.1|  371|Caenorhabditis elegans Collagen
           protein 71 protein.
          Length = 371

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 491 FVGHRVERTPHRASAGTLSEAAAHSC 414
           FV   VE  PH A+ G+ SE   H C
Sbjct: 146 FVAVGVEEGPHTATTGSDSEGTCHDC 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,263,631
Number of Sequences: 27780
Number of extensions: 365095
Number of successful extensions: 785
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)