Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_N03
         (919 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.70 
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    28   2.1  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   6.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.6  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -2

Query: 789 PXPXGGGGFXXXKKPPPNPPPXXXKK 712
           P P    GF    +PPP PPP   KK
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKK 35


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 168 WLLARSKFLIPNILF*YNYSSKCSLKFFY 82
           W+LAR KF   N    YNYS+K  +  F+
Sbjct: 408 WMLARPKFSQINTSHLYNYSTKQMISKFW 436


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 279 PTTIRLARKIISPLETLFLGGVQITLMFLCWATFLKI 169
           P TI L RK+ S L+   +   ++ L F CW   L +
Sbjct: 73  PFTI-LCRKLASTLKQRVIFFTRVLLTFFCWTVLLPL 108


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 768 PPPXGXXGXXVFGPPPXXPP 827
           PPP    G    GPPP  PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,405,656
Number of Sequences: 5004
Number of extensions: 38614
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)