Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_N03
(919 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006662-3|AAF39895.1| 368|Caenorhabditis elegans Hypothetical ... 31 0.87
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 31 1.5
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.7
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.7
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.7
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 29 6.2
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 29 6.2
Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical pr... 28 8.1
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 28 8.1
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 28 8.1
>AC006662-3|AAF39895.1| 368|Caenorhabditis elegans Hypothetical
protein H23L24.4 protein.
Length = 368
Score = 31.5 bits (68), Expect = 0.87
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 171 IWLLARSKFLIPNILF*YNYSSKCSLKFFYVKL 73
+W SK+L+PN +F Y SS C+ + +V L
Sbjct: 35 LWDRTYSKYLLPNSIFLYKRSSTCTRTYIFVIL 67
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/40 (32%), Positives = 15/40 (37%)
Frame = -2
Query: 846 GXXXFXXGXXGXGAQKXXXPXPXGGGGFXXXKKPPPNPPP 727
G + G G G GGGG+ PP PPP
Sbjct: 268 GGGGYAGGGGGGGGSSGGYAGSSGGGGYSAPAAAPPPPPP 307
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/40 (32%), Positives = 15/40 (37%)
Frame = -2
Query: 846 GXXXFXXGXXGXGAQKXXXPXPXGGGGFXXXKKPPPNPPP 727
G + G G G GGGG+ PP PPP
Sbjct: 268 GGGGYAGGGGGGGGSSGGYAGSSGGGGYSAPAAAPPPPPP 307
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +3
Query: 732 GGLGGVFXXXKXPPPXGXXGXXVFGPPPXXPP 827
GGL + PPP G GPPP PP
Sbjct: 733 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 764
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +3
Query: 732 GGLGGVFXXXKXPPPXGXXGXXVFGPPPXXPP 827
GGL + PPP G GPPP PP
Sbjct: 733 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 764
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +3
Query: 732 GGLGGVFXXXKXPPPXGXXGXXVFGPPPXXPP 827
GGL + PPP G GPPP PP
Sbjct: 316 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 347
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -1
Query: 823 GKXGGGPKTXXPXXPXGGGXFXXXKTPPKPPP 728
G GG P P P GG F P PPP
Sbjct: 104 GMPGGVPPQAQPFNPHGGSMFGGPGGPGGPPP 135
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -1
Query: 823 GKXGGGPKTXXPXXPXGGGXFXXXKTPPKPPP 728
G GG P P P GG F P PPP
Sbjct: 384 GMPGGVPPQAQPFNPHGGSMFGGPGGPGGPPP 415
>Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical
protein Y70C5A.2 protein.
Length = 1037
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -2
Query: 231 LFLGGVQITLMFLCWATFLKIWLLA 157
LFL G+Q+TL+F C+ FL I LA
Sbjct: 214 LFLLGIQVTLLF-CFLLFLPICFLA 237
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +1
Query: 733 GVWGGFFXXXKXPPPXGXGGXXFLGPXPXXPP 828
G GG PPP G GG F+ P P PP
Sbjct: 652 GSGGGSSMPMPVPPPGGLGG--FMPPPPPPPP 681
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +1
Query: 733 GVWGGFFXXXKXPPPXGXGGXXFLGPXPXXPP 828
G GG PPP G GG F+ P P PP
Sbjct: 652 GSGGGSSMPMPVPPPGGLGG--FMPPPPPPPP 681
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,645,288
Number of Sequences: 27780
Number of extensions: 301767
Number of successful extensions: 1086
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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