Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_M17
         (944 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   1.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.3  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    24   1.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.0  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    22   9.3  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    22   9.3  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   9.3  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   9.3  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 385 REESRASTPASSTQVKESD--STPAPAKTTKTQSKDTPADSGSDQPKKK 525
           R  +  ST +   ++  +    TP P +  + +  D+P+DSG +   +K
Sbjct: 540 RRANSGSTSSGDDELHRASLSKTPQPPQCPRFRKLDSPSDSGIESGTEK 588


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 16/74 (21%), Positives = 29/74 (39%)
 Frame = +1

Query: 244 RVLKYNEANVQRQKEVQRAHSAQPXXXXXXPAKGRKSDAAVAATTPAREESRASTPASST 423
           R  +  +   QRQ++ Q     +P        +   ++   A        + ASTPA+ T
Sbjct: 161 RPYQQQQQQQQRQQQRQEERRLRPDEIKVEVGEDEFANGGAARDESKAGSTDASTPATVT 220

Query: 424 QVKESDSTPAPAKT 465
               + + PA + T
Sbjct: 221 TTGATTTLPAASAT 234


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +1

Query: 580 EVKIKIPEELKVWL 621
           + KI IP+E+K+W+
Sbjct: 385 DTKITIPKEMKIWI 398


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 315 WLCGMSSLDFFLPLYICFI 259
           WLCG+SS+   +P Y+ +I
Sbjct: 533 WLCGLSSM-LCIPGYMIYI 550


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 315 WLCGMSSLDFFLPLYICFI 259
           WLCG+SS+   +P Y+ +I
Sbjct: 586 WLCGLSSM-LCIPGYMIYI 603


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +1

Query: 187 YLIHYAGWNKNWDEWVPESRVLKYNE 264
           YLI +  W+  ++ W P S ++  ++
Sbjct: 261 YLIKWKNWDLKYNTWEPISNLINCSD 286


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 397 RASTPASSTQVK-ESDSTPAPAKTTKTQSKDTPAD 498
           +A    S  +V+ ++D  P P  T K  + DTP D
Sbjct: 688 KAFAQGSDARVECKADGFPKPQVTWKKAAGDTPGD 722


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 17/78 (21%), Positives = 30/78 (38%)
 Frame = +1

Query: 382 AREESRASTPASSTQVKESDSTPAPAKTTKTQSKDTPADSGSDQPKKKRGRLDLSIESEE 561
           +R+    S        K  +S     +T+K +S+D      S +PK     L+ +I +  
Sbjct: 257 SRKRYSRSREREQKSYKNENSYRKYRETSKERSRDRTERERSREPKIISSLLNNTIHNNN 316

Query: 562 QYLAKVEVKIKIPEELKV 615
            Y       I   E++ V
Sbjct: 317 NYKKLQYYNINYIEQIPV 334


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 17/78 (21%), Positives = 30/78 (38%)
 Frame = +1

Query: 382 AREESRASTPASSTQVKESDSTPAPAKTTKTQSKDTPADSGSDQPKKKRGRLDLSIESEE 561
           +R+    S        K  +S     +T+K +S+D      S +PK     L+ +I +  
Sbjct: 268 SRKRYSRSREREQKSYKNENSYRKYRETSKERSRDRTERERSREPKIISSLLNNTIHNNN 327

Query: 562 QYLAKVEVKIKIPEELKV 615
            Y       I   E++ V
Sbjct: 328 NYKKLQYYNINYIEQIPV 345


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 17/78 (21%), Positives = 30/78 (38%)
 Frame = +1

Query: 382 AREESRASTPASSTQVKESDSTPAPAKTTKTQSKDTPADSGSDQPKKKRGRLDLSIESEE 561
           +R+    S        K  +S     +T+K +S+D      S +PK     L+ +I +  
Sbjct: 268 SRKRYSRSREREQKSYKNENSYRKYRETSKERSRDRTERERSREPKIISSLLNNTIHNNN 327

Query: 562 QYLAKVEVKIKIPEELKV 615
            Y       I   E++ V
Sbjct: 328 NYKKLQYYNINYIEQIPV 345


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 17/78 (21%), Positives = 30/78 (38%)
 Frame = +1

Query: 382 AREESRASTPASSTQVKESDSTPAPAKTTKTQSKDTPADSGSDQPKKKRGRLDLSIESEE 561
           +R+    S        K  +S     +T+K +S+D      S +PK     L+ +I +  
Sbjct: 257 SRKRYSRSREREQKSYKNENSYRKYRETSKERSRDRTERERSREPKIISSLLNNTIHNNN 316

Query: 562 QYLAKVEVKIKIPEELKV 615
            Y       I   E++ V
Sbjct: 317 NYKKLQYYNINYIEQIPV 334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.130    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,125
Number of Sequences: 438
Number of extensions: 3896
Number of successful extensions: 24
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30960384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)