Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_M16
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb...    32   0.13 
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    27   4.9  

>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 141 KTFVSQSKYDEGRKCFFRSFYYICKW 218
           + F S  KY +GR  F RS+ Y+ KW
Sbjct: 64  RIFTSPQKYVQGRHAFTRSYMYVKKW 89


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 366 VTCLKRDSHSRICKYITSQLNLTRF 440
           V  ++ D+ SR+C YITS +NL  F
Sbjct: 220 VPFVELDNASRVCLYITSCVNLLPF 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,937,776
Number of Sequences: 5004
Number of extensions: 62091
Number of successful extensions: 118
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)