Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_M16
         (923 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0648 + 16563147-16565557,16565655-16565850                       29   3.9  
12_02_0820 + 23437811-23440230,23440336-23440534                       29   6.9  
03_02_0034 - 5166987-5167010,5167596-5167659,5168071-5168174,516...    29   6.9  
01_05_0747 - 24857965-24858393,24858502-24860063,24860176-24860245     28   9.1  

>05_03_0648 + 16563147-16565557,16565655-16565850
          Length = 868

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 533 FCLRA*TV*ASVLFFVSAIEFDCNYSFIRN--SFFLYVQTGFHNFKIYKVISI*LNII 700
           F   + TV    +  + A+ +     F++    FF Y++ G  N++ Y+V SI + ++
Sbjct: 615 FACHSSTVHEEAMLAIGALAYATGTDFVKYMPEFFKYLEAGLQNYEEYQVCSISVGVV 672


>12_02_0820 + 23437811-23440230,23440336-23440534
          Length = 872

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 533 FCLRA*TV*ASVLFFVSAIEFDC--NYSFIRNSFFLYVQTGFHNFKIYKVISI*LNII 700
           F  R  TV    +  + A+ +    N+S     F+ Y++ G  NF+ Y+V +I + ++
Sbjct: 617 FACRNATVHEEAMLAIGALAYAAGPNFSKYMPQFYQYLEMGLQNFEEYQVCAITVGVV 674


>03_02_0034 -
           5166987-5167010,5167596-5167659,5168071-5168174,
           5168685-5168829,5168914-5169055,5169432-5169751,
           5169895-5170196,5170603-5170647,5171218-5171268,
           5171374-5171460,5171587-5171764,5172453-5172528,
           5173018-5173234,5173604-5173909
          Length = 686

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 659 NYGNRSEHTKKKNYV*MNSCNQILLRRQKIKPMLIQFKPVNKI 531
           NY + SE T KK  +   S   +LL  QKI+ ++   K ++K+
Sbjct: 582 NYASVSEFTDKKINLLSKSNGNMLLSEQKIRAVVTNAKQMHKV 624


>01_05_0747 - 24857965-24858393,24858502-24860063,24860176-24860245
          Length = 686

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 192 RSFYYICKWNLNFSPAVRCINIVKNVPMLLRVFHY 296
           R FY+  + N  F+P + C+ +V+ VP  +   H+
Sbjct: 375 REFYHPIRANFFFAPWIACLFLVQGVPRPVTEVHH 409


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,871,137
Number of Sequences: 37544
Number of extensions: 289732
Number of successful extensions: 420
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)