Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_M16
         (923 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73102-7|CAA97420.1|  727|Caenorhabditis elegans Hypothetical pr...    32   0.50 
AL132904-3|CAB60972.1|  718|Caenorhabditis elegans Hypothetical ...    31   1.2  
U29381-10|AAA68748.1|  136|Caenorhabditis elegans Hypothetical p...    31   1.5  
L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (spli...    29   6.2  
AF098997-9|AAC68720.1|  325|Caenorhabditis elegans Serpentine re...    28   8.2  

>Z73102-7|CAA97420.1|  727|Caenorhabditis elegans Hypothetical
           protein B0035.6 protein.
          Length = 727

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -2

Query: 178 LPSSYFDCDTKVFHVEYFTNIIRSLXL*INKKTI*HLKWI 59
           +P  +FD   K++H EY T+ + SL   + ++ I + +W+
Sbjct: 193 VPQLFFDRPLKIYHTEYETDRVESLMALVFRRLIFNKRWV 232


>AL132904-3|CAB60972.1|  718|Caenorhabditis elegans Hypothetical
           protein Y111B2A.3 protein.
          Length = 718

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -2

Query: 178 LPSSYFDCDTKVFHVEYFTNIIRSLXL*INKKTI*HLKWI 59
           +P  +FD   K++H EY T+ + SL   + ++ I + +W+
Sbjct: 193 VPQLFFDRRLKMYHTEYETDRVESLMALVFRRLILNKRWV 232


>U29381-10|AAA68748.1|  136|Caenorhabditis elegans Hypothetical
           protein F35D11.1 protein.
          Length = 136

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 228 N*GSIYKYNKNCEKNIFCL 172
           N  S  KYN NCE N+FC+
Sbjct: 34  NENSCLKYNNNCETNVFCV 52


>L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp
           (splicing factor) relatedprotein 8 protein.
          Length = 2329

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -1

Query: 311 KYKSLIME-HTKQHWNVFNDIN 249
           K++ L+ + HT + WN FNDIN
Sbjct: 267 KFEPLVKDLHTDEDWNEFNDIN 288


>AF098997-9|AAC68720.1|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein42 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 20/76 (26%), Positives = 34/76 (44%)
 Frame = +3

Query: 216 WNLNFSPAVRCINIVKNVPMLLRVFHY*RFIF*KKTEKLDVYSLKIPFFCVTCLKRDSHS 395
           W + F   +   + V N+ ++L V +        K+E +D Y   I  F V+C+  D H 
Sbjct: 8   WYITFFYVIGIFSFVLNIAVILLVIY--------KSENIDNYKYFILMFQVSCMLADFHL 59

Query: 396 RICKYITSQLNLTRFM 443
            +   +   + L RFM
Sbjct: 60  SL---LVQPMYLFRFM 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,860,559
Number of Sequences: 27780
Number of extensions: 335656
Number of successful extensions: 640
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)