Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_M16
         (923 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    23   5.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   5.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.8  

>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 213 YKYNKNCEKNIFCLHHI 163
           Y YN NC+K  + +++I
Sbjct: 98  YNYNNNCKKLYYNINYI 114


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 516 LSKTLNFVYGLKL 554
           LSKT+NF Y L L
Sbjct: 470 LSKTINFTYSLAL 482


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 216 IYKYNKNCEKNIFCLHHIL 160
           IY+ NK C  +I C++ ++
Sbjct: 471 IYECNKRCNCDIDCINRVV 489


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,171
Number of Sequences: 438
Number of extensions: 4332
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)