Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_M12
         (987 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.46 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   5.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   9.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.46
 Identities = 18/45 (40%), Positives = 18/45 (40%)
 Frame = +3

Query: 525 APPPPPXPXXPPPXXXXXXGGXPPPPXXGGXPPPPPRXXXPPGXP 659
           AP P P P   P        G PP P  G  PPP      PPG P
Sbjct: 20  APGPQPSPHQSPQAPQR---GSPPNPSQG--PPP----GGPPGAP 55



 Score = 23.0 bits (47), Expect = 4.2
 Identities = 10/31 (32%), Positives = 10/31 (32%)
 Frame = +2

Query: 875 PPXXXTPXPXPPXPXGXGGXPPTXPXPXXXP 967
           PP    P P  P      G PP    P   P
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPPLPNMPGSMP 440



 Score = 22.6 bits (46), Expect = 5.6
 Identities = 11/34 (32%), Positives = 11/34 (32%)
 Frame = +3

Query: 531 PPPPXPXXPPPXXXXXXGGXPPPPXXGGXPPPPP 632
           PP      PP        G PP P   G  P  P
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMP 443


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 725  PPPPPPP 745
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 725  PPPPPPP 745
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 526  PPPPPPXP 549
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 710  AGXXXPPPPPP 742
            +G   PPPPPP
Sbjct: 1854 SGSPEPPPPPP 1864



 Score = 21.8 bits (44), Expect = 9.8
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 877  PPXXNPXPXPPPP 915
            P   +P P PPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 877 PPXXNPXPXPPPPXGXG 927
           PP   P P PPPP   G
Sbjct: 338 PP--KPAPPPPPPSSSG 352



 Score = 22.2 bits (45), Expect = 7.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 531 PPPPXPXXPPP 563
           PP P P  PPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 725 PPPPPPPXXTXXP 763
           P PPPPP  +  P
Sbjct: 341 PAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 7.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 526 PPPPPPXPXXP 558
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = -1

Query: 807 GGGXAXRXPXGGXGXGXMVXXGGGGGGG 724
           G   A     G  G   +V    GGGGG
Sbjct: 23  GSSSAGGVVTGASGGSIVVGANNGGGGG 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,860
Number of Sequences: 438
Number of extensions: 11153
Number of successful extensions: 32
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32653530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)