Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_M10
(934 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 55 2e-08
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 48 3e-06
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 46 6e-06
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 43 5e-05
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 42 9e-05
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 39 9e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 39 0.001
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 39 0.001
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 38 0.003
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 37 0.005
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 37 0.005
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 36 0.006
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 36 0.008
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 35 0.014
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 35 0.019
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 34 0.025
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 34 0.033
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.058
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 33 0.076
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.076
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 32 0.10
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 32 0.13
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 31 0.31
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 29 1.2
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 28 2.2
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 27 3.8
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 27 3.8
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 26 8.7
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 54.8 bits (126), Expect = 2e-08
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Frame = +2
Query: 449 KVSWATSPAXQPKT-DTSNHHHIFXGDLSPEIETXILREXFAPX-GEISNCRIVRDPQTL 622
K++WA+ + K+ ++ + IF GDLSP + + FA + +I+ DPQT
Sbjct: 166 KLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTN 225
Query: 623 KSTGYAFVSFVKKADAXAAIHAMNGXVAG 709
S GY FV F + D +A+ M G + G
Sbjct: 226 VSRGYGFVRFTDENDQKSALAEMQGQICG 254
Score = 36.3 bits (80), Expect = 0.006
Identities = 17/74 (22%), Positives = 37/74 (50%)
Frame = +2
Query: 512 IFXGDLSPEIETXILREXFAPXGEISNCRIVRDPQTLKSTGYAFVSFVKKADAXAAIHAM 691
++ G+L P + +++ + G+ +++R+ T + GY FV F +A +A+
Sbjct: 95 LWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMN 154
Query: 692 NGXVAGIKIHTYEL 733
N + G H ++L
Sbjct: 155 NKPIPGTN-HLFKL 167
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 47.6 bits (108), Expect = 3e-06
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Frame = +2
Query: 449 KVSWATSPAXQP-KTDTSNHHHIFXGDLSPEI--ETXILREXFAPXGEISNCRIVRDPQT 619
+ S+ T+ P T T + ++F +L I T L E F+ G I +C + P T
Sbjct: 399 QTSYETTVTPTPTSTPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPST 458
Query: 620 LKSTGYAFVSFVKKADAXAAIHAMNGXVAGIK 715
S GY FVSF +A AI+ +NG + G K
Sbjct: 459 EISKGYGFVSFSHPFEAVQAINTLNGVLFGKK 490
Score = 32.3 bits (70), Expect = 0.10
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = +2
Query: 512 IFXGDLSPEIETXILREXFAPXGEISNCRIV-----RDPQTLKSTGYAFVSFVKKADAXA 676
I+ G+L ++ L E F P G S ++ + + T +AF++F K A
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 677 AIHAMNG 697
AI ++NG
Sbjct: 82 AIASLNG 88
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 46.4 bits (105), Expect = 6e-06
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +2
Query: 512 IFXGDLSPEIETXILREXFAPXGEISNCRIVRDPQTLKSTGYAFVSFVKKADAXAAIHAM 691
++ G+L P + +L E F G +++ R+ RD T +S GYA+V+F D A+ +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 692 N 694
N
Sbjct: 142 N 142
Score = 46.4 bits (105), Expect = 6e-06
Identities = 27/100 (27%), Positives = 47/100 (47%)
Frame = +2
Query: 416 MNKRVVLDKEMKVSWATSPAXQPKTDTSNHHHIFXGDLSPEIETXILREXFAPXGEISNC 595
+N ++ + ++ W+ K T N +F +L P I+ L + F+ G+I +C
Sbjct: 141 LNYTLIKGRPCRIMWSQRDPSLRKMGTGN---VFIKNLDPAIDNKALHDTFSAFGKILSC 197
Query: 596 RIVRDPQTLKSTGYAFVSFVKKADAXAAIHAMNGXVAGIK 715
++ D + + GY FV F A AAI +NG + K
Sbjct: 198 KVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDK 236
Score = 34.7 bits (76), Expect = 0.019
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 247 LYVGNLDPSVTEVXXCTWFGQXGDVQGCXIIREPANDPYAFSRV-YVSH 390
+Y+ NLD +TE FGQ G++ ++++ + P F V Y +H
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANH 311
Score = 34.3 bits (75), Expect = 0.025
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Frame = +2
Query: 416 MNKRVVLDKEMKVSWATSPAX-QPKTDT--SNHHHIFXGDLSPEIETXILREXFAPXGEI 586
+N ++ DK++ V S Q K + +N +++ +L EI + F GEI
Sbjct: 228 VNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEI 287
Query: 587 SNCRIVRDPQTLKSTGYAFVSFVKKADAXAAIHAMN 694
++ +V+D Q K G+ FV++ A A+ +N
Sbjct: 288 TSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDELN 322
Score = 32.3 bits (70), Expect = 0.10
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 244 TLYVGNLDPSVTEVXXCTWFGQXGDVQGCXIIRE 345
+LYVG LDPSVTE F G V + R+
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRD 114
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 43.2 bits (97), Expect = 5e-05
Identities = 26/79 (32%), Positives = 40/79 (50%)
Frame = +2
Query: 416 MNKRVVLDKEMKVSWATSPAXQPKTDTSNHHHIFXGDLSPEIETXILREXFAPXGEISNC 595
+N + +D+ ++V + P Q DT +F G+L+ E E L F G I
Sbjct: 245 LNGTMFMDRHLRVDSVSHPMPQ---DTKRC--VFVGNLAFEAEEEPLWRYFGDCGSIDYV 299
Query: 596 RIVRDPQTLKSTGYAFVSF 652
RIVRDP+T G+A++ F
Sbjct: 300 RIVRDPKTNLGKGFAYIQF 318
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 241 KTLYVGNLDPSVTEVXXCTWFGQXGDVQGCXIIREP 348
+ ++VGNL E +FG G + I+R+P
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDP 305
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 42.3 bits (95), Expect = 9e-05
Identities = 21/62 (33%), Positives = 34/62 (54%)
Frame = +2
Query: 509 HIFXGDLSPEIETXILREXFAPXGEISNCRIVRDPQTLKSTGYAFVSFVKKADAXAAIHA 688
++F G+L P ++ +L + F+ G++ V + +S GY FVS+ A AAI A
Sbjct: 100 NLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEA 159
Query: 689 MN 694
MN
Sbjct: 160 MN 161
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 226 DESHPKTLYVGNLDPSVTEVXXCTWFGQXGDVQGCXIIRE 345
D + T+Y+GNLD VT+ Q G V I R+
Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRD 45
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 39.1 bits (87), Expect = 9e-04
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +2
Query: 512 IFXGDLSPEIETXILREXFAPXGEISNCRIVRDPQTLKSTGYAFVSF 652
+F G L+ E LR+ F GE+ +C ++RD T +S G+ F++F
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTF 211
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 38.7 bits (86), Expect = 0.001
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +2
Query: 512 IFXGDLSPEIETXILREXFAPXGEISNCRIVRDPQTLKSTGYAFVSFVKKADAXAAIHAM 691
+F L+P + L F+ G+I +C+++RD +T S YAF+ F K A M
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305
Query: 692 -NGXVAGIKIH 721
N + +IH
Sbjct: 306 QNVLIDDSRIH 316
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 38.7 bits (86), Expect = 0.001
Identities = 22/62 (35%), Positives = 30/62 (48%)
Frame = +2
Query: 512 IFXGDLSPEIETXILREXFAPXGEISNCRIVRDPQTLKSTGYAFVSFVKKADAXAAIHAM 691
+F LS + + + F G I R+VR+ T KS GYAFV F ++ D A A
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 692 NG 697
G
Sbjct: 162 AG 163
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 37.5 bits (83), Expect = 0.003
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +2
Query: 512 IFXGDLSPEIETXILREXFAPXGEISNCRIVRDPQTLKSTGYAFVSFVKKADAXAAIHAM 691
+ G+L+P + +L F P GEI + + R + + YAFV F + DA A+ M
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAV-DRSYAFVEFDEPEDAKEAMENM 66
Query: 692 N 694
N
Sbjct: 67 N 67
Score = 27.9 bits (59), Expect = 2.2
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 229 ESHPKTLYVGNLDPSVTEVXXCTWFGQXGDVQGCXIIR-EPAND-PYAF 369
E T++VGNL PSVTE F G++ + R E A D YAF
Sbjct: 2 ERRKATVHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAF 50
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 36.7 bits (81), Expect = 0.005
Identities = 16/66 (24%), Positives = 28/66 (42%)
Frame = +2
Query: 512 IFXGDLSPEIETXILREXFAPXGEISNCRIVRDPQTLKSTGYAFVSFVKKADAXAAIHAM 691
+F G++ ++ + E F G + ++V DP+T GY F F A+ +
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 692 NGXVAG 709
N G
Sbjct: 69 NNSELG 74
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 36.7 bits (81), Expect = 0.005
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +2
Query: 500 NHHHIFXGDLSPEIETXILREXFAPXGEISNCRIVRDPQTLKSTGYAFVSFVKKADAXAA 679
NH +F G+L ++ L + F+ + ++VRD + K+ G+ FVSF A
Sbjct: 28 NHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREG-KTRGFGFVSFKDSDQFLKA 86
Query: 680 IHAMNGXVAG 709
NG G
Sbjct: 87 WREKNGKYIG 96
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 36.3 bits (80), Expect = 0.006
Identities = 19/67 (28%), Positives = 35/67 (52%)
Frame = +2
Query: 491 DTSNHHHIFXGDLSPEIETXILREXFAPXGEISNCRIVRDPQTLKSTGYAFVSFVKKADA 670
D S+ +I+ G+L ++ + F+ GE + +VRD +T KS G+AF+ + +
Sbjct: 26 DYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRST 85
Query: 671 XAAIHAM 691
A+ M
Sbjct: 86 VLAVDNM 92
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 35.9 bits (79), Expect = 0.008
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +2
Query: 611 PQTLKSTGYAFVSFVKKADAXAAIHAMNGXV 703
P S G+ FV F KA A AA+HAMNG V
Sbjct: 659 PGKYLSMGFGFVEFKDKASAVAAMHAMNGFV 689
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/61 (24%), Positives = 26/61 (42%)
Frame = +2
Query: 497 SNHHHIFXGDLSPEIETXILREXFAPXGEISNCRIVRDPQTLKSTGYAFVSFVKKADAXA 676
S +F +L+ L+ F P G++ + D +T G+A++ F DA
Sbjct: 320 SETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVR 379
Query: 677 A 679
A
Sbjct: 380 A 380
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 35.1 bits (77), Expect = 0.014
Identities = 16/68 (23%), Positives = 35/68 (51%)
Frame = +2
Query: 512 IFXGDLSPEIETXILREXFAPXGEISNCRIVRDPQTLKSTGYAFVSFVKKADAXAAIHAM 691
++ G++ E+ + + F G + + ++V DP++ + GY F + A A +A+ +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 692 NGXVAGIK 715
N AG +
Sbjct: 67 NNYDAGTR 74
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 34.7 bits (76), Expect = 0.019
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +2
Query: 512 IFXGDLSPEIETXILREXFAPXGEISNCRIVRDPQTLKSTGYAFVSFVKKADAXAAIHA 688
+F ++SP + + LR F GE+ + + +P T S G +SF K++ A H+
Sbjct: 96 VFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSISVAAHS 154
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 34.3 bits (75), Expect = 0.025
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 217 NMGDE-SHPK-TLYVGNLDPSVTEVXXCTWFGQXGDVQGCXIIREP 348
N GD+ S P T++VGNL + TE T FG GD+Q + +P
Sbjct: 356 NFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDP 401
Score = 33.5 bits (73), Expect = 0.044
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +2
Query: 512 IFXGDLSPEIETXILREXFAPXGEISNCRIVRDPQTLKSTGYAFVSFVKKADAXAAIHAM 691
+F G+LS L F G+I + R+ DPQ+ + G+ +V+F A +
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMN 427
Query: 692 NGXVAG 709
+AG
Sbjct: 428 GHFIAG 433
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 33.9 bits (74), Expect = 0.033
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = +2
Query: 512 IFXGDLSPEIETXILREXFAPXGEISNCRIVRDPQTLKSTGYAFVSFVKKADAXAAIHAM 691
+F L+ + + L + F G + + +IVRD + +S G A+V F + AAI
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALS 301
Query: 692 NGXVAGIKI 718
+ G+ +
Sbjct: 302 GKRLLGLPV 310
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 33.1 bits (72), Expect = 0.058
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +2
Query: 512 IFXGDLSPEIETXILREXFAPXGEISNCRIVRDPQTLKSTGYAFVSFVKKADAXAA 679
+F +L+ + + L F+ G I + +V +P+T ++ GY FV+F DA A
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRA 62
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 32.7 bits (71), Expect = 0.076
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +2
Query: 554 LREXFAPXGEISNCRIVRDPQTLKSTGYAFVSFVKKADAXAAIHAMNGXVAGIK 715
L + F+P G I + + P + S GY FV+F + A A +NG + G K
Sbjct: 400 LEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKK 453
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 229 ESHPKTLYVGNLDPSVTEVXXCTWFGQXGDVQ 324
E T+YVGN+D +++ F + G V+
Sbjct: 13 EDESSTIYVGNIDSRLSDEEIIKHFSKYGQVE 44
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 32.7 bits (71), Expect = 0.076
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 512 IFXGDLSPEIETXILREXFAPXGEISNCRIVRDPQTLKSTGYAFVSFV 655
+F G+L + L+ F G++ + RI D + + GYAFV F+
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFI 141
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 32.3 bits (70), Expect = 0.10
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +2
Query: 524 DLSPEIETXILREXFAPXGEISNCRIVRDPQTLKSTGYAFVSFVKKADAXAAIHAMNG 697
+LS + LR+ F G I + +D +T ++ G+AFVS+ + A A ++G
Sbjct: 208 NLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDG 265
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 31.9 bits (69), Expect = 0.13
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +2
Query: 512 IFXGDLSPEIETXILREXFAPXGEISNCRI----VRDPQTLKSTGYAFVSFVKKADAXAA 679
+F G LS + +R F G + I VR L +G AFV+F + D A
Sbjct: 46 VFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKA 105
Query: 680 IHAMNG 697
I +NG
Sbjct: 106 IETLNG 111
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 623 KSTGYAFVSFVKKADAXAAIHAMNGXVAG 709
+ G+ FVSF D AI MNG G
Sbjct: 256 RGRGFGFVSFANAEDQSRAIEEMNGKQVG 284
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 30.7 bits (66), Expect = 0.31
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 238 PKTLYVGNLDP-SVTEVXXCTWFGQXGDVQGCXIIREPANDPYAFSR 375
P +++VG LDP + T F + G V C II + +AF R
Sbjct: 364 PYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLR 410
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 28.7 bits (61), Expect = 1.2
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +1
Query: 217 NMGDESHP-KTLYVGNLDPSVTEVXXCTWFG-QXGDVQGCXIIREPANDPYAF 369
N D++ P T+YVGNL PS +E F Q G + C R N P F
Sbjct: 417 NPADQNPPCNTIYVGNLPPSTSEEELKVLFSTQVGYKRLC--FRTKGNGPMCF 467
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.9 bits (59), Expect = 2.2
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 5/97 (5%)
Frame = +2
Query: 416 MNKRVVLDKEMKVSWATSPAXQPKT-----DTSNHHHIFXGDLSPEIETXILREXFAPXG 580
+ + + E+KV W + A + ++F G+L I +RE P G
Sbjct: 171 LKRLTIRGTEVKVGWGKNSASNSSVLLAVQQSGACRNVFLGNLPNGITEDEIREDLEPFG 230
Query: 581 EISNCRIVRDPQTLKSTGYAFVSFVKKADAXAAIHAM 691
I +IV + AFV F+ A A A+ +
Sbjct: 231 PIDQIKIVTE------RNIAFVHFLNIAAAIKAVQEL 261
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 241 KTLYVGNLDPSVTEVXXCTWFGQXGDVQGCXIIREP 348
+ +YVGNL V + GQ G+V C I+ P
Sbjct: 66 RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLP 101
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 566 FAPXGEISNCRIVRDPQTLKSTGYAFVSFVKKADAXAAIHAMNG 697
F P G + C I P+T S +AFV + DA A + ++G
Sbjct: 27 FEPFGPLIRCDIPI-PRTRTSRPFAFVEYEDSRDAEDAYYEVHG 69
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 247 LYVGNLDPSVTEVXXCTWFGQXGDVQ 324
L+VGNLD T+ FGQ G ++
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIR 255
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,520,576
Number of Sequences: 5004
Number of extensions: 40532
Number of successful extensions: 106
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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