Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_M09
         (948 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    50   4e-07
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    31   0.18 
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   2.9  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    26   6.7  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   8.9  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    26   8.9  

>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 50.4 bits (115), Expect = 4e-07
 Identities = 23/63 (36%), Positives = 37/63 (58%)
 Frame = +1

Query: 373 ENKPFQRLPNNVIPKHYALELIPNLEKFTFKGKTAVKVSIVNPTNVIVLNSLDLDLKNVK 552
           ++K    LP NV P HY L L P+LE FT+ GK  V + ++  +N I L+ ++L +    
Sbjct: 13  DDKNRNLLPKNVKPIHYDLSLYPDLETFTYGGKVVVTLDVLEDSNSITLHGINLRILTAA 72

Query: 553 LQY 561
           L++
Sbjct: 73  LEW 75


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1033

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
 Frame = +1

Query: 322  YTARPTLAISKEKVT-MPENKPFQRLP---NNVIPKHYALELIPNLEKFTFKGK--TAVK 483
            Y    T  ++ E++  + E+   +RL    NN++  H  ++L+P L    F GK   +VK
Sbjct: 802  YVVNSTSKLTNEEINNVFESYDLKRLESYSNNLLDYHVIVDLLPKLAHLYFSGKFPDSVK 861

Query: 484  VSIVNPTNVIVLNSLDLDLKNVKLQYNDGSNSAIIPSSVELS 609
            +S V  + ++ L      +  ++ ++N  SN  ++   V+LS
Sbjct: 862  LSPVQQSVLLALGLQYKTIDTLEKEFNLPSNQ-LLAMLVKLS 902


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 541 KNVKLQYNDGSNSAIIPSSVELSTTDETASIYFSESLLEGEATLYS 678
           +N  L   D + ++    ++ +S TD  AS   S SLL     LYS
Sbjct: 47  RNGLLSLLDSNTTSASVQTIAISQTDNAASCIPSASLLSSSVVLYS 92


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 173 VKFLDWFITRESNVMKTTKSTLTSNICVSNQLLGSEILVESQ 48
           V+FL WF+    N +   KST+     + +      + +ESQ
Sbjct: 264 VEFLSWFLNTLHNCLGGKKSTIAKPTSIVHYSFQGFVRIESQ 305


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = +1

Query: 415  KHYALELIPNLEKFTFKGKTAVKVSIVNPTNVIVLNSLD--LDLKNVKLQYNDGS-NSAI 585
            +HY LEL  +L      G+T +  S    ++VIV   LD  +DL   + Q++D S NS  
Sbjct: 1522 EHYYLELKESLPGVLQNGQTDLDPSKEQMSSVIVSFLLDELMDLTETR-QFSDRSPNSEF 1580

Query: 586  IPSSVEL 606
             P +  L
Sbjct: 1581 TPENDSL 1587


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 592 SSVELSTTDETASIYFSESLLEGEATL 672
           SSVE STT   +S+     L EGE TL
Sbjct: 90  SSVEKSTTIPNSSVVLDHLLNEGENTL 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,689,669
Number of Sequences: 5004
Number of extensions: 54013
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)