Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_M09
(948 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0080 + 6598427-6598663,6599246-6599391,6599567-6599669,660... 60 3e-09
09_03_0038 + 11790075-11790302,11790397-11790542,11790915-117910... 52 9e-07
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 51 1e-06
08_02_0585 + 19014674-19014871,19014987-19015132,19016742-190168... 49 5e-06
01_01_0626 - 4713943-4714515,4714645-4714853,4717310-4717628 29 4.1
09_04_0198 + 15528576-15528645,15528746-15528893,15529182-155293... 29 7.1
07_03_0244 - 15715047-15715163,15716672-15716824,15718629-157187... 29 7.1
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 28 9.4
>02_02_0080 +
6598427-6598663,6599246-6599391,6599567-6599669,
6600407-6600593,6600699-6600792,6601290-6601443,
6601751-6601855,6601937-6602053,6602248-6602361,
6602891-6603073,6603207-6603486,6603565-6603686,
6603763-6603860,6603941-6604118,6604439-6604553,
6604656-6604723,6604825-6604902,6604986-6605060,
6605156-6605338
Length = 878
Score = 59.7 bits (138), Expect = 3e-09
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Frame = +1
Query: 391 RLPNNVIPKHYALELIPNLEKFTFKGKTAVKVSIVNPTNVIVLNSLDLDLKNVKLQYN-D 567
RLP P+ Y L L+P+L+ F G V V + PT +VLN+ +L++ +Q+
Sbjct: 16 RLPGFAAPRRYDLRLVPDLDGCAFTGSVDVSVDVTAPTRFLVLNAAELEVSPGGVQFKPH 75
Query: 568 GSNSAIIPSSVELSTTDETASIYFSESLLEGEATL 672
G+ + P+ V DE I F+E L GE TL
Sbjct: 76 GAEQELHPAEVTNVPEDEILIIRFNEVLPVGEGTL 110
>09_03_0038 +
11790075-11790302,11790397-11790542,11790915-11791017,
11791148-11791334,11791466-11791559,11791702-11791855,
11792189-11792305,11792695-11792808,11793629-11793811,
11794209-11794494,11794592-11794713,11794746-11794802,
11794803-11794900,11795036-11795213,11795355-11795455,
11795530-11795629,11795751-11795828,11796785-11796862,
11796956-11797138
Length = 868
Score = 51.6 bits (118), Expect = 9e-07
Identities = 30/94 (31%), Positives = 44/94 (46%)
Frame = +1
Query: 391 RLPNNVIPKHYALELIPNLEKFTFKGKTAVKVSIVNPTNVIVLNSLDLDLKNVKLQYNDG 570
RLP P+ Y L L P+L+ F G +V V + PT +VLN+ DL + +++
Sbjct: 19 RLPRFAAPRRYELRLRPDLDACVFTGDASVVVDVSAPTRFLVLNAADLAVDRASIRF--- 75
Query: 571 SNSAIIPSSVELSTTDETASIYFSESLLEGEATL 672
+ P+ V L DE + F L GE L
Sbjct: 76 --QGLAPTEVSLFEDDEILVLEFDGELPLGEGVL 107
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 51.2 bits (117), Expect = 1e-06
Identities = 29/94 (30%), Positives = 45/94 (47%)
Frame = +1
Query: 391 RLPNNVIPKHYALELIPNLEKFTFKGKTAVKVSIVNPTNVIVLNSLDLDLKNVKLQYNDG 570
RLP P+ Y L L P+L F G+ +V V + PT +VLN+ DL + +++
Sbjct: 13 RLPRFAAPRRYELRLRPDLAACVFSGEASVAVDVSAPTRFLVLNAADLAVDRASIRF--- 69
Query: 571 SNSAIIPSSVELSTTDETASIYFSESLLEGEATL 672
+ P+ V + DE + F+ L GE L
Sbjct: 70 --QGLAPAEVSVFEEDEILVLEFAGELPLGEGVL 101
>08_02_0585 +
19014674-19014871,19014987-19015132,19016742-19016844,
19017064-19017250,19017368-19017461,19017570-19017723,
19018076-19018192,19018276-19018296,19019096-19019209,
19019970-19020152,19021032-19021239,19021326-19021447,
19021559-19021656,19021875-19022052,19022130-19022244,
19022331-19022398,19022526-19022603,19023737-19023814,
19023897-19024082
Length = 815
Score = 49.2 bits (112), Expect = 5e-06
Identities = 35/94 (37%), Positives = 45/94 (47%)
Frame = +1
Query: 391 RLPNNVIPKHYALELIPNLEKFTFKGKTAVKVSIVNPTNVIVLNSLDLDLKNVKLQYNDG 570
RLP P Y L L P+L F G AV V++ PT +VLN+ +L + DG
Sbjct: 13 RLPRCASPLSYDLRLRPDLAACAFSGSAAVAVAVSAPTRFLVLNAAELAV--------DG 64
Query: 571 SNSAIIPSSVELSTTDETASIYFSESLLEGEATL 672
S S ++PS V DE I F + L GE L
Sbjct: 65 S-SDLVPSEVVQFEEDEIVVIGFGQDLPIGEGVL 97
>01_01_0626 - 4713943-4714515,4714645-4714853,4717310-4717628
Length = 366
Score = 29.5 bits (63), Expect = 4.1
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 466 GKTAVKVSIVNPTNVI---VLNSLDLDLKNVKLQYNDGSNSAIIPSSVELSTTDET 624
G++ I+ PT V V+N D + KL DGS+++I PS++ L T T
Sbjct: 282 GESGTNHEILKPTPVNGKEVINKADEVVGMSKLTIGDGSSNSIEPSALSLQLTGPT 337
>09_04_0198 +
15528576-15528645,15528746-15528893,15529182-15529377,
15529512-15529604,15530403-15530462,15530563-15530637,
15531072-15531152,15531262-15531603,15531967-15531999
Length = 365
Score = 28.7 bits (61), Expect = 7.1
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 532 LDLKNVKLQYNDGSNSAIIPSSVELSTTDETASIYFSESLL 654
LD+K L Y+DG A IP+ +E+ SI+FSE +
Sbjct: 192 LDIKPY-LPYSDGVKGAAIPNWLEVDGALAVESIHFSEHFI 231
>07_03_0244 -
15715047-15715163,15716672-15716824,15718629-15718748,
15718830-15719045,15719902-15719968,15720051-15720125,
15720607-15720698,15721053-15721154,15721642-15721711,
15721788-15721846,15721947-15722031,15722443-15722520,
15722627-15722725,15722819-15722910,15725572-15725661,
15725937-15725995,15727966-15728281,15728627-15728702,
15729998-15730308,15730577-15730634,15731082-15731092,
15731247-15731397,15733372-15733778
Length = 967
Score = 28.7 bits (61), Expect = 7.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 483 FHRSFSLESKFFQIWNQFQCIMLRNHIIR 397
F RS ++ + + WN C++L H+IR
Sbjct: 699 FTRSVQIDPENGEAWNNIACLLLSRHMIR 727
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 28.3 bits (60), Expect = 9.4
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 417 LRNHIIRKSLKRL-VLWHCHFFFRDRQCRTRCINVP 313
L + ++R RL LW C F +R R CR R ++ P
Sbjct: 156 LHDVVLRPLRCRLHALWRCFFHWRSRCCRHRGLSPP 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,686,242
Number of Sequences: 37544
Number of extensions: 291933
Number of successful extensions: 722
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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