Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_M07
         (937 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    52   1e-07
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...    43   7e-05
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    35   0.014
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    34   0.025
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    30   0.54 
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    28   1.6  
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|...    26   8.8  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    26   8.8  
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch...    26   8.8  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 52.0 bits (119), Expect = 1e-07
 Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
 Frame = +3

Query: 414 QVQQWFRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMIGMFDKDRNGQINLDEF- 590
           + ++ F   D+DQ G ITS EL   ++ + GQ+ +      MI   D D NG I+  EF 
Sbjct: 13  EFREAFSLFDRDQDGNITSNEL-GVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFL 71

Query: 591 ----DKLYTYVN--QWLAVFKTYDTDQSGFIDEGELSKALTQMGSRFSPE 722
                K+    N  +    FK +D D +G+I   EL+  LT +G R S E
Sbjct: 72  TMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQE 121



 Score = 40.3 bits (90), Expect = 4e-04
 Identities = 22/62 (35%), Positives = 35/62 (56%)
 Frame = +3

Query: 414 QVQQWFRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMIGMFDKDRNGQINLDEFD 593
           +V++ F+  DKD +G+IT  EL   L +  G+  S+     MI   D D +G IN +EF 
Sbjct: 86  EVREAFKVFDKDGNGYITVEELTHVLTSL-GERLSQEEVADMIREADTDGDGVINYEEFS 144

Query: 594 KL 599
           ++
Sbjct: 145 RV 146


>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 42.7 bits (96), Expect = 7e-05
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
 Frame = +3

Query: 414 QVQQWFRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMIGMFDKDRNGQINLDEFD 593
           ++++ F  +DKD  G I   ++++ L +   Q  SE + N M    +   N    L    
Sbjct: 49  ELKEAFALLDKDGDGNIGREDVKTMLTSLN-QDASEDSINHMFESINPPINLAAFLTAMG 107

Query: 594 KLYTYV---NQWLAVFKTYDTDQSGFIDEGELSKALTQMGSRFSPEFINILTKRY 749
            +   +   N  L  F T+D  QSG I    +  AL+ MG R  P+ +  + + Y
Sbjct: 108 SMLCRISPRNDLLEAFSTFDDTQSGKIPISTMRDALSSMGDRMDPQEVESILRSY 162


>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 35.1 bits (77), Expect = 0.014
 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
 Frame = +3

Query: 414 QVQQWFRAVDKD-QSGFITSTELRSALVNAQGQTFSETAC--NLMIGMFDKDRNGQINLD 584
           ++QQW++   KD  SG +  +E +   +  Q   F + +     +  +FD D+NG I+  
Sbjct: 26  ELQQWYKGFFKDCPSGHLNKSEFQK--IYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFK 83

Query: 585 EFDKLYTYV------NQWLAVFKTYDTDQSGFIDEGEL 680
           EF    +        ++ +  F+ YD D +G I   E+
Sbjct: 84  EFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEM 121



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
 Frame = +3

Query: 543 GMFDKDRNGQINLDEFDKLYTYVNQW-------LAVFKTYDTDQSGFIDEGELSKALT 695
           G F    +G +N  EF K+Y     +         VF  +D D++G+ID  E   AL+
Sbjct: 33  GFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFKEFICALS 90



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 519 ETACNLMIGMFDKDRNGQINLDEF 590
           E   N +  M DK+++GQ+ L+EF
Sbjct: 146 EKRVNKIFNMMDKNKDGQLTLEEF 169


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 34.3 bits (75), Expect = 0.025
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
 Frame = +3

Query: 414 QVQQWFRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMIGMFDKDRNGQINLDEF- 590
           ++++ F  +D +QSG I   E  S    A     S    + +  + D+D  G ++  EF 
Sbjct: 25  RIRKRFIKIDANQSGSIDRNEFLSIPSVA-----SNPLASRLFSVVDEDGGGDVDFQEFI 79

Query: 591 DKLYTYV------NQWLAVFKTYDTDQSGFIDEGELSKALTQM 701
           + L  +        +    FK YD D+ G+I  GEL   L  M
Sbjct: 80  NSLSVFSVHGNKEEKLKFAFKIYDIDRDGYISNGELYLVLKMM 122



 Score = 31.5 bits (68), Expect = 0.18
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +3

Query: 429 FRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMIGM----FDKDRNGQINLDEFDK 596
           F+  D D+ G+I++ EL   L    G    E     ++       DKDR+G+I+ +EF  
Sbjct: 99  FKIYDIDRDGYISNGELYLVLKMMVGTNLREDQLQQIVDKTIMEVDKDRDGKISFEEFKD 158

Query: 597 LYTYVN 614
           + +  N
Sbjct: 159 IVSGSN 164


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 29.9 bits (64), Expect = 0.54
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +3

Query: 429 FRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMIGMFDKDRNGQINLDEF 590
           FR  DKD SG+I + +  +  +   G+  S+    LM+   D   +G  +  +F
Sbjct: 84  FRVFDKDNSGYIETAKF-ADYMKTLGEKLSDNEVQLMVQEADPTNSGSFDYYDF 136


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +3

Query: 429 FRAVDKDQSGFITSTELRSALVNAQGQTFSETACNLMIGMFDKDRNGQINLDEF 590
           F+  DKD +G I   ELR  L +   +  +E    L+ G+  KD  G +N  +F
Sbjct: 83  FQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVKD--GMVNYHDF 134


>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 20/66 (30%), Positives = 29/66 (43%)
 Frame = +3

Query: 321 GQAAYGGMPPGQLEIGHGPYPSIGVGGTITPQVQQWFRAVDKDQSGFITSTELRSALVNA 500
           G+ A+GG     L+   GP   + V G I    + W   +    SG + +TEL S  V +
Sbjct: 304 GRQAWGGFSREALK-NWGPLCRLAVPGVIMICSEYWAFELVTFASGVLGTTELASMSVLS 362

Query: 501 QGQTFS 518
              T S
Sbjct: 363 TTSTLS 368


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 560 VFVEHTNHQIASSFGKSLT 504
           V+  H N QI SSFG SLT
Sbjct: 33  VWTGHKNGQIKSSFGPSLT 51


>SPAC1687.14c |||EF hand family protein, unknown
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +3

Query: 630 FKTYDTDQSGFIDEGELSKALTQMGSRFSPEFINIL 737
           F  +D    G+ID  +L ++  Q+G   + E + ++
Sbjct: 18  FDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLM 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,378
Number of Sequences: 5004
Number of extensions: 62159
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)