Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_M07
         (937 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            26   1.9  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            26   1.9  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    24   7.6  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 9/43 (20%), Positives = 22/43 (51%)
 Frame = +3

Query: 600 YTYVNQWLAVFKTYDTDQSGFIDEGELSKALTQMGSRFSPEFI 728
           + + + WL +  TY T+QS  I+      ++  + + + P+ +
Sbjct: 180 WKFNSTWLGLATTYGTEQSAIIERSSDVVSVYMLDNNYHPKLV 222


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 9/43 (20%), Positives = 22/43 (51%)
 Frame = +3

Query: 600 YTYVNQWLAVFKTYDTDQSGFIDEGELSKALTQMGSRFSPEFI 728
           + + + WL +  TY T+QS  I+      ++  + + + P+ +
Sbjct: 180 WKFNSTWLGLATTYGTEQSAIIERSSDVVSVYMLDNNYHPKLV 222


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 408 TPQVQQWFRAVDKDQS 455
           TP+VQQWF  + + +S
Sbjct: 163 TPEVQQWFEELKEKRS 178


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 755,436
Number of Sequences: 2352
Number of extensions: 14645
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 102122397
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)