Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_M04
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    29   1.2  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     28   1.6  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    26   8.6  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   8.6  

>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 251 VDPNEVFLFFRLSNTYPGKVLLQQRLRVG 165
           VDP   F FF +SN + G V+  +RL++G
Sbjct: 365 VDPVSAFRFFEMSNIH-GLVIRNRRLKIG 392


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +1

Query: 226 NKKTSFGSTLLDCIQSGVENLDSGVGIYAPDAESYSVFAELFDPII 363
           N+  S+ +      Q  + +      IY PD   Y ++A LF PI+
Sbjct: 479 NEALSYSNNAFSKSQEALFHPSMVTTIYFPDESKYGIYAPLFAPIL 524


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 358 IIEDYHNGFKKTDKHPPKNW 417
           I++  ++ FK + KH P+NW
Sbjct: 304 IVQHKNDIFKSSQKHQPRNW 323


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 18/43 (41%), Positives = 20/43 (46%)
 Frame = +3

Query: 489 PLARGVPLQPLPHRVPVQGDGGQGLRHPVQPRGRAQGHVLPPH 617
           P+   VP  P P  VPV  + GQ L  PV P        LPPH
Sbjct: 671 PVVPEVPSVPQPPAVPVVPEAGQ-LNEPVVP-------PLPPH 705


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,699
Number of Sequences: 5004
Number of extensions: 48900
Number of successful extensions: 176
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)