Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_M03
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces...    65   2e-11
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    27   2.8  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    27   2.8  
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac...    27   3.7  
SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymera...    26   6.5  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    26   8.6  
SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S...    26   8.6  
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    26   8.6  

>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 298

 Score = 64.9 bits (151), Expect = 2e-11
 Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 6/160 (3%)
 Frame = +1

Query: 166 SVEDLHKFLDSFDHVLSDCDGVIWTQDS-LPRVGEFFKQMKKRGKTVNFVSNNSLRSRAN 342
           S ++  +F+D FD  L DCDGV+W+    +P V +  K ++  GK + FVSNNS +SR  
Sbjct: 7   SPKEYKEFIDKFDVFLFDCDGVLWSGSKPIPGVTDTMKLLRSLGKQIIFVSNNSTKSRET 66

Query: 343 YEAQFKAASIDNGFESLIIPSIAVAEYLKSV---TFNKTVYCVTCTETKRVLEAHGFKCK 513
           Y  +     I    E +   + + A Y+K V     +K V+ +     +  L+  G    
Sbjct: 67  YMNKINEHGIAAKLEEIYPSAYSSATYVKKVLKLPADKKVFVLGEAGIEDELDRVGVAHI 126

Query: 514 EG--PDLGPEYYGEYIQYLEDDEEIGAVVFDSDFKINLPK 627
            G  P L      E ++ +  D  +GAV+   D  +   K
Sbjct: 127 GGTDPSLRRALASEDVEKIGPDPSVGAVLCGMDMHVTYLK 166


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/69 (23%), Positives = 28/69 (40%)
 Frame = -2

Query: 871  DHVTDKRLDWIGDAGSLIANSPKPFLASQAARALVSLLP*PDL*NSRP*TQKTSFHGHHP 692
            DH+    L+ +G+  ++     KPFL      +     P   + ++ P      FH HH 
Sbjct: 932  DHLKMTALEVVGNHSAVFVTGRKPFLILSTLHSNAKFFP---ISSNIPILSVAPFHAHHA 988

Query: 691  ISRPIYEED 665
                IY ++
Sbjct: 989  PQGYIYVDE 997


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 317 ITAFDPEQIMKLNSKQPASTTALRA*SFHLSQWQSTLNQLHS 442
           +TAF   Q  KLN+K+ +S        F L  W  +  +LH+
Sbjct: 436 LTAFHKLQNEKLNTKKESSAPLSLVTDFLLHSWPKSAERLHT 477


>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 153

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 103 QKKSLKVLSIMGIESKHLLDLSVEDL 180
           +K+S +  +  G+E + LLDLS E L
Sbjct: 16  KKRSFRTFAYRGVELEQLLDLSAEQL 41


>SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymerase
           I and III subunit Rpc19 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +1

Query: 19  DHTIGNSLRFXVTHT--VRLSAHAF*YYSIQKKSLKVLSIMGIESKHLLDLSVEDLHKFL 192
           DHT+GNSLR+ +     V    ++  + S  K + ++ +     +  +L   ++DL    
Sbjct: 43  DHTLGNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTTAVDVLRKGLDDLIDLC 102

Query: 193 DS 198
           D+
Sbjct: 103 DA 104


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 91   YYSIQKKSLKVLSIMGIESKHLL 159
            Y+SI KK  ++L ++G+E+  LL
Sbjct: 1043 YFSIHKKLKQLLELVGVENASLL 1065


>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 103 QKKSLKVLSIMGIESKHLLDLSVEDL 180
           +K++ +  +  G+E + LLDLS E L
Sbjct: 17  KKRTFRTFAYRGVELEQLLDLSAEQL 42


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -1

Query: 236 HITPSQSERTWSKES--RNLCKSSTLKSNKCLDSIPIMLNTLRLFF 105
           ++ P  S   WS  +     C  STL S   L  +P  +N  RLFF
Sbjct: 118 NVDPEISNALWSVLTWKNTSCSFSTLMSILALVYVPSWINLPRLFF 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,488,129
Number of Sequences: 5004
Number of extensions: 71740
Number of successful extensions: 227
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)