Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_M01
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc...    80   5e-16
SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Sc...    79   1e-15
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    29   0.70 

>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 79.8 bits (188), Expect = 5e-16
 Identities = 37/51 (72%), Positives = 44/51 (86%)
 Frame = +1

Query: 103 AKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 255
           +KK KK+ ++INS+LAL MKSGKY LGYK TLKTLR GKAKL++IA NAPP
Sbjct: 14  SKKGKKSGDTINSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPP 64



 Score = 77.8 bits (183), Expect = 2e-15
 Identities = 32/47 (68%), Positives = 40/47 (85%)
 Frame = +2

Query: 269 EIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 409
           E+EYYA+L++  VHHYSGNNI+LGTACGK +RV  LA+ D GDSDI+
Sbjct: 69  ELEYYAMLSRCSVHHYSGNNIDLGTACGKLFRVGVLAVIDAGDSDIL 115


>SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 78.6 bits (185), Expect = 1e-15
 Identities = 36/53 (67%), Positives = 43/53 (81%)
 Frame = +1

Query: 97  VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 255
           V  KK KK+ ++IN++LAL MKSGKY LGYK TLKTLR GKAKL++IA N PP
Sbjct: 4   VVTKKSKKSGDTINAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPP 56



 Score = 78.6 bits (185), Expect = 1e-15
 Identities = 33/47 (70%), Positives = 40/47 (85%)
 Frame = +2

Query: 269 EIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 409
           E+EYYA+L+K  VHHY+G NI+LGTACGK +RV  LAITD GDSDI+
Sbjct: 61  ELEYYAMLSKANVHHYAGTNIDLGTACGKLFRVGVLAITDAGDSDIL 107


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 109 KQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVI 234
           ++KK I+     ++L   SGKYC G   T+  L++G  + ++
Sbjct: 279 QEKKLIQRFFDEISL--DSGKYCFGVVDTMNALQEGAVETLL 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,289,385
Number of Sequences: 5004
Number of extensions: 34939
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)