Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_L19
         (918 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    27   2.8  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    27   2.8  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    27   3.7  

>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/25 (44%), Positives = 20/25 (80%)
 Frame = +2

Query: 458 RFTAPVMSSTLISILLKESTTASPM 532
           +F++  ++STL+S+L+  S TASP+
Sbjct: 2   KFSSIPIASTLLSLLVASSVTASPL 26


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
 Frame = +1

Query: 223 KEEDIPGEEGNLLEQPKEDTIAPRNPFMKVRTYVLALRPWSLSASLLPTLLGAALSYRL- 399
           ++ DIP    +    P   +I       K    V A+R WSL  +++  LL   + +   
Sbjct: 43  EQNDIPSVTSSGSSTPSSISIEKEIKISKGNVIVKAIRSWSLYVAIIAILLLLVILHSFQ 102

Query: 400 --PGDNG 414
             P DNG
Sbjct: 103 GRPQDNG 109


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 602 LDVHFLVPLVISSPXRMEHLALVYFGGFIILLSIYWW 712
           + V FL+P V     +  + A+V   G ++   +YWW
Sbjct: 481 VSVIFLMPTVRPVTPQNMNYAVVVLAGVLLFSLVYWW 517


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,775,294
Number of Sequences: 5004
Number of extensions: 54416
Number of successful extensions: 148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)