Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_L17
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    29   0.89 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.6  

>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 724 FKLSLMPSPPQIGNEAVEQMSQVRN 650
           FKL+  PS P +GN A + +S  RN
Sbjct: 376 FKLTSRPSTPNVGNTAPDALSSPRN 400


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 2/136 (1%)
 Frame = -3

Query: 617 YTPHSTK*APTTFPEVCLKGLFFSPIE*SRGLKWLPSVSATTISTPSLELHPSELQSSTC 438
           YTP ST+ +    P      +  S    S  ++   S S+ + S P      S L SST 
Sbjct: 128 YTPSSTESSSLLDPSSVSSAILPS----STSVEVSISSSSLSSSDPLTSSTFSSLSSSTS 183

Query: 437 IWYLPPFFTLKAADVALPAPLQT--SFLSSRTLDLSAASPVHTFQLTETSAASFLVTSWL 264
               P   +  ++  +  AP  T  S+LSS ++  S++SP  +   T TS  S L TS +
Sbjct: 184 SSQ-PSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTS--SSLSTSSI 240

Query: 263 *AVAAWLTSTIANVRS 216
            + ++  +ST +++ S
Sbjct: 241 PSTSSSSSSTSSSLSS 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,200,311
Number of Sequences: 5004
Number of extensions: 61014
Number of successful extensions: 160
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)