Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_L15
(897 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0821 - 27960414-27961253 34 0.18
06_01_1193 + 10264360-10264504,10264763-10264910,10268350-102687... 31 1.2
12_02_0474 + 19482150-19482152,19482205-19482336,19482513-194826... 31 1.6
04_04_0383 - 24851496-24851681,24851785-24851882,24851964-248520... 30 2.9
03_02_0110 - 5678057-5678794,5679279-5679470,5679971-5680087,568... 29 5.0
08_02_0076 + 11967606-11967905,11969125-11969223,11969813-119741... 29 6.6
01_01_0088 + 688792-691441,691629-693013 29 6.6
08_02_1449 - 27174451-27178005 28 8.8
06_01_0435 + 3092910-3093392,3093938-3094196,3094636-3094979 28 8.8
02_04_0625 - 24547435-24547569,24547674-24547742,24547871-245479... 28 8.8
>03_05_0821 - 27960414-27961253
Length = 279
Score = 33.9 bits (74), Expect = 0.18
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Frame = +2
Query: 458 LYYMIKIIDLLDTVFFVLRKKFNQVTFLHVYHH---LGMCLL 574
++Y+ K+ +L DT+ +L ++ +T LHVYHH + MC L
Sbjct: 124 VFYLSKVYELGDTLLILLGRR--PLTLLHVYHHAAVIAMCYL 163
>06_01_1193 +
10264360-10264504,10264763-10264910,10268350-10268748,
10268925-10271214
Length = 993
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +2
Query: 329 YLSLYLAAQCMTRLYWSGYYNLWCQKIILEDTP--LERIVVSRVWLYYMIKIIDLLDTVF 502
+++L+ + C T L WS +L I D P L + S + M++++DL D F
Sbjct: 536 HIALHGSMSCKTGLDWSIIRSL----AIFGDRPNNLAHTICSNK--FRMLRVLDLEDVKF 589
Query: 503 FVLRKKFNQVTFLHVYHHL 559
+ +K FN + L +L
Sbjct: 590 LITQKDFNNIALLRHLKYL 608
>12_02_0474 +
19482150-19482152,19482205-19482336,19482513-19482602,
19482649-19482708,19482959-19483058,19483137-19483234,
19483351-19483525,19484167-19484270
Length = 253
Score = 30.7 bits (66), Expect = 1.6
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +1
Query: 814 HLYSYHIIYXFXFNSPILH 870
H+Y YH++Y F + P+L+
Sbjct: 104 HIYDYHVVYSFSYKVPVLY 122
>04_04_0383 -
24851496-24851681,24851785-24851882,24851964-24852063,
24852741-24852899
Length = 180
Score = 29.9 bits (64), Expect = 2.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 814 HLYSYHIIYXFXFNSPILH 870
H Y YH++Y F + P+L+
Sbjct: 62 HFYDYHVVYSFSYKVPVLY 80
>03_02_0110 -
5678057-5678794,5679279-5679470,5679971-5680087,
5680331-5680402,5680444-5680569,5681086-5681445,
5681944-5682057,5682158-5682199
Length = 586
Score = 29.1 bits (62), Expect = 5.0
Identities = 10/22 (45%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = -3
Query: 754 SNKNCKICN-CVMYFFHHCRTQ 692
++K+C++C+ CV F HHCR +
Sbjct: 176 NSKHCRVCDKCVDGFDHHCRVR 197
>08_02_0076 +
11967606-11967905,11969125-11969223,11969813-11974124,
11974177-11974211
Length = 1581
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = -3
Query: 370 QPCHALSCQVQGQINLHEVVYDYRCLQFEGLPVLHQRRAPRANEPMVHVQDQE 212
+ C+ ++ QV + L + Y Y +++ H+ +P +EP VH +DQ+
Sbjct: 213 EKCYRIAKQVSEALELESLDYLY-AHKYQRTRTDHRETSPCQSEPKVHGRDQQ 264
>01_01_0088 + 688792-691441,691629-693013
Length = 1344
Score = 28.7 bits (61), Expect = 6.6
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +1
Query: 229 VPSVRSLLGPGADGEPAALQTEDNDNHIQPRANLSVLVLGSSVHDKVVL-VRILQSLVSE 405
+ SV ++GPG G+ Q ND+ + + + V S+ D L +IL SL +
Sbjct: 251 IMSVLPIVGPGGVGKTTFAQHLYNDHRTKQHFTVMIWVCVSTTFDVTELTTKILNSLNAT 310
Query: 406 DNIRRHATGENCRQQGLVVLH 468
+ + G N R+ L LH
Sbjct: 311 E-----SQGTNIRESSLDQLH 326
>08_02_1449 - 27174451-27178005
Length = 1184
Score = 28.3 bits (60), Expect = 8.8
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +1
Query: 226 RVPSVRSLLGPGADGEPAALQTEDNDNHIQPRANLSVLVLGSSVHDKVVLVRILQSLVSE 405
R+ V S++G G G+ + ND +Q R L + + S + V LVR + L +
Sbjct: 188 RMVEVLSIVGMGGLGKTTLAKMVYNDTRVQQRFELPMWLCVSDDFNVVSLVRSIIELATR 247
Query: 406 DN 411
N
Sbjct: 248 GN 249
>06_01_0435 + 3092910-3093392,3093938-3094196,3094636-3094979
Length = 361
Score = 28.3 bits (60), Expect = 8.8
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 1/110 (0%)
Frame = +1
Query: 232 PSVRSLLGPGADGEPAALQTEDNDNHIQPRANLSVLVLGSSVHDKVVLVRILQSLVSEDN 411
P R LL A G A + + + R + L+ + D+ V +++ +D
Sbjct: 52 PQRRLLLHSAAYGRYLAATGKPGPSGL--RGHRVALINLDRLDDESVSWEAVRTAKGDDV 109
Query: 412 IRRHATGENCR-QQGLVVLHD*DH*PIRYGFLRASEEVQSGDVPPRVPPL 558
+ RHATG N R G D + + + E + S D PR PP+
Sbjct: 110 LLRHATGRNLRANHGAGATVDDRYSRMLLWVDQVVEAIPSADSVPRPPPI 159
>02_04_0625 -
24547435-24547569,24547674-24547742,24547871-24547997,
24548086-24548209,24548714-24548832,24548953-24549044,
24549124-24549329,24549429-24549534,24549636-24549740,
24549836-24549942,24550030-24550253,24550341-24550468,
24550945-24551022,24551338-24552012,24552655-24552798,
24552985-24553064,24553958-24554029,24554124-24554343,
24554460-24554590,24555118-24555243,24555567-24555695,
24556156-24556318,24556408-24556545,24557198-24557317,
24557521-24557682,24557751-24557876,24558172-24558342,
24558435-24558590,24559061-24559408
Length = 1526
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 490 RYGFLR-ASEEVQSGDVPPRVPPLRNVSSWFR 582
R FL A+EEV D PP PP R V FR
Sbjct: 31 RAAFLSGAAEEVAQADAPPPPPPGRKVLESFR 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,400,235
Number of Sequences: 37544
Number of extensions: 551670
Number of successful extensions: 1638
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1638
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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