Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_L15
(897 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z19154-3|CAA79555.1| 291|Caenorhabditis elegans Hypothetical pr... 60 2e-09
Z68749-3|CAA92958.1| 288|Caenorhabditis elegans Hypothetical pr... 58 1e-08
AF244356-1|AAF70462.1| 288|Caenorhabditis elegans long chain po... 58 1e-08
Z68749-1|CAA92960.2| 309|Caenorhabditis elegans Hypothetical pr... 52 6e-07
Z81058-5|CAB02921.1| 274|Caenorhabditis elegans Hypothetical pr... 50 2e-06
U41011-5|AAA82288.2| 320|Caenorhabditis elegans Fatty acid elon... 45 6e-05
U61954-12|AAK29807.1| 274|Caenorhabditis elegans Fatty acid elo... 41 0.001
U61954-9|AAK29808.1| 286|Caenorhabditis elegans Fatty acid elon... 40 0.002
AL132949-2|CAB61069.1| 286|Caenorhabditis elegans Hypothetical ... 40 0.003
AF036699-4|AAB88358.1| 281|Caenorhabditis elegans Collagen prot... 32 0.64
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 32 0.64
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 32 0.64
Z50742-5|CAA90618.2| 650|Caenorhabditis elegans Hypothetical pr... 30 2.0
AL032657-2|CAA21738.1| 368|Caenorhabditis elegans Hypothetical ... 29 3.4
AF025457-12|AAY55849.1| 244|Caenorhabditis elegans Hypothetical... 29 3.4
U58757-8|AAC47918.3| 506|Caenorhabditis elegans Hypothetical pr... 29 4.5
AC024770-5|AAK84605.2| 684|Caenorhabditis elegans Hypothetical ... 29 4.5
>Z19154-3|CAA79555.1| 291|Caenorhabditis elegans Hypothetical
protein C40H1.4 protein.
Length = 291
Score = 60.5 bits (140), Expect = 2e-09
Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 7/177 (3%)
Frame = +2
Query: 137 YHFVNDDLADPRTKTFPLVSNPIPVLLILYVYHRFVRSWGPALMENRQPFKLKTTIIIYN 316
YHF + +ADP+ T + I +Y ++ MENR+PF LK +I++N
Sbjct: 31 YHFPGEQVADPQYWTILFQKYWYHSITISVLYFILIKVI-QKFMENRKPFTLKYPLILWN 89
Query: 317 ----LVQIYLSLYLAAQCMTRLYWSGYYNLWCQKIILEDTPLERIVVSRVWLYYMIKIID 484
I +L + + LY G+Y C D + + + + KI++
Sbjct: 90 GALAAFSIIATLRFSIDPLRSLYAEGFYKTLCYSCNPTD-----VAAFWSFAFALSKIVE 144
Query: 485 LLDTVFFVLRKKFNQVTFLHVYHHLGMCLLG-FVGTKYVPGG--HGVMXGFINSLVH 646
L DT+F +LRK+ + FLH YHH + + G ++ G + +M F +SL++
Sbjct: 145 LGDTMFIILRKR--PLIFLHYYHHAAVLIYTVHSGAEHTAAGRFYILMNYFAHSLMY 199
>Z68749-3|CAA92958.1| 288|Caenorhabditis elegans Hypothetical
protein F56H11.4 protein.
Length = 288
Score = 57.6 bits (133), Expect = 1e-08
Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 6/150 (4%)
Frame = +2
Query: 218 ILYVYHRFVRSWGPALMENRQPFKLKTTIIIYNLVQIYLSLYLAAQCMTRLYWS----GY 385
ILY+ F W M NRQPF+L + I+N + S+ A + + + G
Sbjct: 52 ILYMVVVFGTKW---FMRNRQPFQLTIPLNIWNFILAAFSIAGAVKMTPEFFGTIANKGI 108
Query: 386 YNLWCQKIILEDTPLERIVVSRVWLYYMIKIIDLLDTVFFVLRKKFNQVTFLHVYHHLGM 565
+C+ + + T E VWL+ K+ +L+DT+F VLRK+ + FLH YHH+
Sbjct: 109 VASYCK--VFDFTKGENGYW--VWLFMASKLFELVDTIFLVLRKR--PLMFLHWYHHILT 162
Query: 566 CLLGFVGTKYVPG--GHGVMXGFINSLVHA 649
+ + PG +G+ ++N +VHA
Sbjct: 163 MIYAWYSHPLTPGFNRYGI---YLNFVVHA 189
>AF244356-1|AAF70462.1| 288|Caenorhabditis elegans long chain
polyunsaturated fattyacid elongation enzyme protein.
Length = 288
Score = 57.6 bits (133), Expect = 1e-08
Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 6/150 (4%)
Frame = +2
Query: 218 ILYVYHRFVRSWGPALMENRQPFKLKTTIIIYNLVQIYLSLYLAAQCMTRLYWS----GY 385
ILY+ F W M NRQPF+L + I+N + S+ A + + + G
Sbjct: 52 ILYMVVVFGTKW---FMRNRQPFQLTIPLNIWNFILAAFSIAGAVKMTPEFFGTIANKGI 108
Query: 386 YNLWCQKIILEDTPLERIVVSRVWLYYMIKIIDLLDTVFFVLRKKFNQVTFLHVYHHLGM 565
+C+ + + T E VWL+ K+ +L+DT+F VLRK+ + FLH YHH+
Sbjct: 109 VASYCK--VFDFTKGENGYW--VWLFMASKLFELVDTIFLVLRKR--PLMFLHWYHHILT 162
Query: 566 CLLGFVGTKYVPG--GHGVMXGFINSLVHA 649
+ + PG +G+ ++N +VHA
Sbjct: 163 MIYAWYSHPLTPGFNRYGI---YLNFVVHA 189
>Z68749-1|CAA92960.2| 309|Caenorhabditis elegans Hypothetical
protein F56H11.3 protein.
Length = 309
Score = 52.0 bits (119), Expect = 6e-07
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 6/134 (4%)
Frame = +2
Query: 266 MENRQPFKLKTTIIIYNLVQIYLSLY----LAAQCMTRLYWSGYYNLWCQKIILEDTPLE 433
M +R+PF+L T + ++N S+Y + + ++ G Y C+ L + P +
Sbjct: 87 MRDREPFQLTTALRLWNFFLSVFSIYGSWTMFPFMVQQIRLYGLYGCGCEA--LSNLPSQ 144
Query: 434 RIVVSRVWLYYMI--KIIDLLDTVFFVLRKKFNQVTFLHVYHHLGMCLLGFVGTKYVPGG 607
+ WL+ I K ++ +DT F VLRKK + FLH YHH+ + F P
Sbjct: 145 ----AEYWLFLTILSKAVEFVDTFFLVLRKK--PLIFLHWYHHMATFVF-FCSNYPTPSS 197
Query: 608 HGVMXGFINSLVHA 649
+ +N VHA
Sbjct: 198 QSRVGVIVNLFVHA 211
>Z81058-5|CAB02921.1| 274|Caenorhabditis elegans Hypothetical
protein F11E6.5 protein.
Length = 274
Score = 50.0 bits (114), Expect = 2e-06
Identities = 46/163 (28%), Positives = 73/163 (44%), Gaps = 4/163 (2%)
Frame = +2
Query: 80 MTPXQGTVMGTLIKNITHYYHFVNDDLADPRTKTFPLVSNPIPVLLILYVYHRFVRSWGP 259
M Q + TL+ +T + D D TF +S I + ++ +Y +G
Sbjct: 1 MAAAQTSPAATLVDVLTKPWSL---DQTDSYMSTFVPLSYKIMIGYLVTIY------FGQ 51
Query: 260 ALMENRQPFKLKTTIIIYNLVQIYLSLYLAAQCMTRLYW----SGYYNLWCQKIILEDTP 427
LM +R+PF L+ T+ ++N S A + + L+ G+ +CQ E+
Sbjct: 52 KLMAHRKPFDLQNTLALWNFGFSLFSGIAAYKLIPELFGVFMKDGFVASYCQN---ENYY 108
Query: 428 LERIVVSRVWLYYMIKIIDLLDTVFFVLRKKFNQVTFLHVYHH 556
+ W + M K +L DT+F VLRKK V F+H YHH
Sbjct: 109 TDASTGFWGWAFVMSKAPELGDTMFLVLRKK--PVIFMHWYHH 149
>U41011-5|AAA82288.2| 320|Caenorhabditis elegans Fatty acid
elongation protein 3 protein.
Length = 320
Score = 45.2 bits (102), Expect = 6e-05
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Frame = +2
Query: 254 GPALMENRQPFKLKTTIIIYNLVQIYLSLYLAAQCMTRLY---WSGYYNLWCQKIILEDT 424
G +ME +PF+L T + ++N S+ L MT + WS N + + I +
Sbjct: 55 GKKIMEKYKPFQLDTPLFVWNSFLAIFSI-LGFLRMTPEFVWSWSAEGNSF-KYSICHSS 112
Query: 425 PLERIVVSRVWLYYMIKIIDLLDTVFFVLRKKFNQVTFLHVYHHL 559
+ + + M K+ +L+DT+F VLRK+ + FLH YHH+
Sbjct: 113 YAQGVTGFWTEQFAMSKLFELIDTIFIVLRKR--PLIFLHWYHHV 155
>U61954-12|AAK29807.1| 274|Caenorhabditis elegans Fatty acid
elongation protein 6 protein.
Length = 274
Score = 41.1 bits (92), Expect = 0.001
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Frame = +2
Query: 260 ALMENRQPFKLKTTIIIYNL-VQIYLSLYLAAQCMTRLYWSGYYNLWCQKIILEDTPLER 436
A+M NR+PF L + ++N + I+ +L A L+ + I + D
Sbjct: 49 AVMTNRKPFDLTGPLNLWNAGLAIFSTLGSLATTFGLLHEFFSRGFFESYIHIGDF-YNG 107
Query: 437 IVVSRVWLYYMIKIIDLLDTVFFVLRKKFNQVTFLHVYHHL 559
+ WL+ + K+ + DT+F +LRKK + FLH YHH+
Sbjct: 108 LSGMFTWLFVLSKVAEFGDTLFIILRKK--PLMFLHWYHHV 146
>U61954-9|AAK29808.1| 286|Caenorhabditis elegans Fatty acid
elongation protein 5 protein.
Length = 286
Score = 40.3 bits (90), Expect = 0.002
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = +2
Query: 452 VWLYYMIKIIDLLDTVFFVLRKKFNQVTFLHVYHHLGMCLLGFVG--TKYVPGGHGVMXG 625
++L+ + KI +LLDTVF VLRK+ + F+H YHH L G+ + H V
Sbjct: 119 IFLWVISKIPELLDTVFIVLRKR--PLIFMHWYHH---ALTGYYALVCYHEDAVHMVWVV 173
Query: 626 FINSLVHA 649
++N ++HA
Sbjct: 174 WMNYIIHA 181
>AL132949-2|CAB61069.1| 286|Caenorhabditis elegans Hypothetical
protein Y53F4B.2 protein.
Length = 286
Score = 39.5 bits (88), Expect = 0.003
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 2/130 (1%)
Frame = +2
Query: 266 MENRQPFKLKTTIIIYNLVQIYLSLYLAAQCMTRLYWSGYYNLWCQKIILEDTPLERIVV 445
ME+R+P ++ ++ +N S+ + Y + + + I L P
Sbjct: 70 MESRKPKSMRPLLLAWNGFLAVFSIMGTWRFGIEFYDAVFRRGFIDSICLAVNPRSP--- 126
Query: 446 SRVW--LYYMIKIIDLLDTVFFVLRKKFNQVTFLHVYHHLGMCLLGFVGTKYVPGGHGVM 619
S W ++ + KI + DT+F VLRK+ V FLH YHH + +L + + G
Sbjct: 127 SAFWACMFALSKIAEFGDTMFLVLRKR--PVIFLHWYHHAVVLILSWHAAIELT-APGRW 183
Query: 620 XGFINSLVHA 649
F+N LVH+
Sbjct: 184 FIFMNYLVHS 193
>AF036699-4|AAB88358.1| 281|Caenorhabditis elegans Collagen protein
104 protein.
Length = 281
Score = 31.9 bits (69), Expect = 0.64
Identities = 18/48 (37%), Positives = 20/48 (41%)
Frame = -2
Query: 275 GSPSAPGPKSERTDGTRTRSRAPVSGLKPKGKSSSVDQPSHR*QNGNN 132
G P APG E D R S P+G S V QP Q GN+
Sbjct: 181 GEPGAPGNNGEPGDKGRDGSHGTKGAPGPQGPSGPVGQPGFPGQPGND 228
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 31.9 bits (69), Expect = 0.64
Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = -2
Query: 278 AGSPSAPGPKSERTD-GTRTRS--RAPVSGLKPKGKSSSVDQPSHR*QNGN 135
AG P APGPK G +S R P P G + S QP H GN
Sbjct: 142 AGPPGAPGPKGNNGQPGAPAQSGGRGPPGPRGPAGDAGSPGQPGHPGSPGN 192
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 31.9 bits (69), Expect = 0.64
Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = -2
Query: 278 AGSPSAPGPKSERTD-GTRTRS--RAPVSGLKPKGKSSSVDQPSHR*QNGN 135
AG P APGPK G +S R P P G + S QP H GN
Sbjct: 142 AGPPGAPGPKGNNGQPGAPAQSGGRGPPGPRGPAGDAGSPGQPGHPGSPGN 192
>Z50742-5|CAA90618.2| 650|Caenorhabditis elegans Hypothetical
protein K09A11.5 protein.
Length = 650
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = -2
Query: 284 RAAGSPSAPGPKSERT---DGTRTRSRAPVSGLKPKGKSSSVDQP 159
R+A SPSAP K ++T +GTR +RA L+ + K D P
Sbjct: 207 RSAASPSAPSKKIKKTQNIEGTRRITRAEAKRLELEKKKGDGDFP 251
>AL032657-2|CAA21738.1| 368|Caenorhabditis elegans Hypothetical
protein Y47H9C.2 protein.
Length = 368
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Frame = -3
Query: 772 CPKCRISN----KNCKIC-NCVMYFFHHC 701
C CR+ +C IC NCV+ F HHC
Sbjct: 166 CTTCRLYRPPRCSHCAICDNCVLMFDHHC 194
>AF025457-12|AAY55849.1| 244|Caenorhabditis elegans Hypothetical
protein C08E3.14 protein.
Length = 244
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = -2
Query: 380 LTNTTLSCTELPSTRTDKFARGCI*LSLSSV*RAAGSPSAPGPKSERTDG 231
+T + L EL S F GC+ + SSV A SP P P+ R DG
Sbjct: 125 ITTSNLHVNEL-SLAVSSFTFGCVKFNPSSVRPCACSPGRPSPEENR-DG 172
>U58757-8|AAC47918.3| 506|Caenorhabditis elegans Hypothetical
protein C01B10.6a protein.
Length = 506
Score = 29.1 bits (62), Expect = 4.5
Identities = 25/79 (31%), Positives = 37/79 (46%)
Frame = -2
Query: 425 ACLLILSSDTKDCNILTNTTLSCTELPSTRTDKFARGCI*LSLSSV*RAAGSPSAPGPKS 246
A LL+L + + ++T + T +PS D + + S + GS +APG S
Sbjct: 6 AVLLLLVAVSSKAQGSSSTVIPST-VPSPTGDTSQATTVTGASSDSTGSTGSSAAPG--S 62
Query: 245 ERTDGTRTRSRAPVSGLKP 189
TDG+ T S APV P
Sbjct: 63 TVTDGSNTGSTAPVPSTTP 81
>AC024770-5|AAK84605.2| 684|Caenorhabditis elegans Hypothetical
protein Y39H10A.6 protein.
Length = 684
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = -1
Query: 270 SISAGPQERTNRWYTYKIKSTGIGFETKGKVFVRGSAKSSLTKW 139
S+ P +T W +K + + F GK+ G +S+T W
Sbjct: 239 SVKTIPWRQTQLWDHHKFEIFCVKFSRNGKMMASGGKSNSITLW 282
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,891,559
Number of Sequences: 27780
Number of extensions: 478314
Number of successful extensions: 1406
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1393
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -