Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_L14
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    31   0.17 
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    29   1.2  

>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -2

Query: 617 PIASKGAGGQVKPKNFSASQEGTRSAQSQRLKSGLNASPGGHTMSKARPPTHVRYW 450
           P +SKGAG + K +N S ++   +   S+ L+  L  S G H  S  +    +  W
Sbjct: 67  PSSSKGAGNEPKSQNSSTTRGSAKKQSSKGLEEKLINSYGTHVESLNKGRRLIEIW 122


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = +1

Query: 247 RDYQATNMICPDGLHFNPSVEWPAYPCGYPVEVTCVG 357
           + ++ +  +C     + P+   PA P GY +++ C+G
Sbjct: 364 KKFKISVRVCSQRYPYPPNATKPATPLGYMLDICCIG 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,362,685
Number of Sequences: 5004
Number of extensions: 73560
Number of successful extensions: 165
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)