Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_L13
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.031
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.88 

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.9 bits (74), Expect = 0.031
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = +1

Query: 442 PPPPXGXGXFFXGPXPXPPXKXPXPXVXGGGGXFXPP 552
           PPPP   G    GP P PP   P P V  GG  +  P
Sbjct: 762 PPPPPPPGVAGAGPPPPPP---PPPAVSAGGSRYYAP 795


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 25/76 (32%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
 Frame = -2

Query: 659 PPPGPFXXXGPFGXXXKKXFFXGXPXXXGXKXXPPXGGXKXPPPPXTXGXGXFXGG---X 489
           PPPGP    G FG    +    G     G       GG +  P     G G F GG    
Sbjct: 200 PPPGP-GGFGGFGGFGGEGHHHGGHGGFGGGP----GGFEGGPGGFGGGPGGFGGGLGGF 254

Query: 488 GXGPXKKXPXPXGGGG 441
           G GP      P G GG
Sbjct: 255 GGGPGGFGGGPGGHGG 270



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = -2

Query: 551 GGXKXPPPPXTXGXGXFXGGXGXGPXKKXPXPXGGG 444
           GG    PPP   G G F G  G G         GGG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229



 Score = 26.2 bits (55), Expect = 6.2
 Identities = 20/62 (32%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
 Frame = +3

Query: 405 GGGXGXFXXXXKXPPPXGXGXFFXGPXPPXPXKXPXPXGXGGG-GGFXPPXXGXXFXPPX 581
           GGG G F      PPP   G    G             G GGG GGF     G    P  
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246

Query: 582 XG 587
            G
Sbjct: 247 FG 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,383,940
Number of Sequences: 5004
Number of extensions: 16472
Number of successful extensions: 34
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)