Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_L12
(912 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003383-1|AAB54234.1| 379|Caenorhabditis elegans Hypothetical ... 36 0.030
AF024490-1|AAB70308.1| 334|Caenorhabditis elegans Hypothetical ... 36 0.040
AF039040-4|AAB94182.1| 368|Caenorhabditis elegans Hypothetical ... 35 0.070
Z82084-4|CAB04980.1| 667|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z81147-11|CAL69739.1| 323|Caenorhabditis elegans Hypothetical p... 29 4.6
Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical p... 29 6.1
Z81492-10|CAB04029.2| 322|Caenorhabditis elegans Hypothetical p... 29 6.1
Z68333-4|CAA92723.2| 271|Caenorhabditis elegans Hypothetical pr... 29 6.1
AY373340-1|AAQ76550.1| 1007|Caenorhabditis elegans BAM-2 protein. 29 6.1
AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical ... 29 6.1
AL023828-18|CAA19462.2| 742|Caenorhabditis elegans Hypothetical... 29 6.1
AL023828-17|CAA19463.2| 826|Caenorhabditis elegans Hypothetical... 29 6.1
AJ132699-1|CAA10735.1| 742|Caenorhabditis elegans centaurin bet... 29 6.1
AJ132698-1|CAA10734.1| 826|Caenorhabditis elegans centaurin bet... 29 6.1
AF016654-5|AAB66027.1| 348|Caenorhabditis elegans Hypothetical ... 29 6.1
AC024853-1|AAO21419.1| 1007|Caenorhabditis elegans Branching abn... 29 6.1
Z81131-6|CAE17977.2| 734|Caenorhabditis elegans Hypothetical pr... 28 8.1
AY241925-2|AAO85273.1| 734|Caenorhabditis elegans chondroitin d... 28 8.1
AY241925-1|AAO85274.1| 736|Caenorhabditis elegans chondroitin d... 28 8.1
AB088397-1|BAC76780.1| 726|Caenorhabditis elegans chondroitin s... 28 8.1
>AF003383-1|AAB54234.1| 379|Caenorhabditis elegans Hypothetical
protein ZC250.2 protein.
Length = 379
Score = 36.3 bits (80), Expect = 0.030
Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 4/134 (2%)
Frame = +2
Query: 356 ITKTSVDDIELNKNITLNDIFISVKTTKHYQYTRLPIILKTWFQLAKEQTWFFTDTETKQ 535
I K S+ + + +I+ +++ + VKT + + RL ++ TW +D +
Sbjct: 138 IVKCSIPFPKTSNSISDSEVHVMVKTFEGHHVNRLEVLKNTW----------ASDVSRIE 187
Query: 536 HQNQTNGHMVNT-NCSASHQRKHLCCKMSVEYDRFLES---GKKWFCHFDDDXYVNVPRL 703
+ + + T N + + C K + RFL S G KW DDD +N RL
Sbjct: 188 YCSDKEDPAIPTINLGVDNTDRGHCAKTWEIFRRFLGSSGNGAKWLVVADDDTLMNFKRL 247
Query: 704 VSVLQTLXAPRRLV 745
+L+ + +++
Sbjct: 248 KQMLELYDSGDKII 261
>AF024490-1|AAB70308.1| 334|Caenorhabditis elegans Hypothetical
protein C02H6.1 protein.
Length = 334
Score = 35.9 bits (79), Expect = 0.040
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 2/126 (1%)
Frame = +2
Query: 371 VDDIELNKNI-TLNDIFISVKTTKHYQYTRLPIILKTWFQLAKEQTWFFTDTETKQHQNQ 547
++D E ++ T +F V+T+K Y R+P + TW +F +T +
Sbjct: 72 IEDSEATYDLPTSGQLFCFVETSKKYFNDRVPSMASTWLPRCDNGRFFL---KTPLVDEK 128
Query: 548 TNGHMVNTNCSASHQRKHLCCKMSVEYD-RFLESGKKWFCHFDDDXYVNVPRLVSVLQTL 724
V N S+ +S Y ++ W+ DDD Y + L L TL
Sbjct: 129 IPFSTVYRNLEDSYYDLFRKTLLSFYYSYTYISKDFDWYLKADDDNYFMIDHLKEYLDTL 188
Query: 725 XAPRRL 742
A + L
Sbjct: 189 DASKPL 194
>AF039040-4|AAB94182.1| 368|Caenorhabditis elegans Hypothetical
protein T22B11.2 protein.
Length = 368
Score = 35.1 bits (77), Expect = 0.070
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Frame = +2
Query: 431 TTKHYQYTRLPIILKTWFQLAKEQTWFFTDTETKQHQNQTNGHMVNTNCSASHQRKHLCC 610
TT Y TR+P I +TW + + FT+++ + + T H V S+ +
Sbjct: 104 TTSIYHKTRVPAITETWLRRC-DAGHLFTNSDRFLNAS-TPYHTVFDGLPESYYKLFWKT 161
Query: 611 KMSVEY-DRFLESGKKWFCHFDDDXYVNVPRLVSVLQTL 724
++++ Y +++ W+ DDD Y+ V L L TL
Sbjct: 162 RLALLYIYKYVSKDFDWYFKGDDDTYLIVENLQRYLATL 200
>Z82084-4|CAB04980.1| 667|Caenorhabditis elegans Hypothetical
protein ZK1053.4 protein.
Length = 667
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = -1
Query: 351 SIDRSATCTTPARLSWKLKLTPPWYTNKLQYPKANSTAAALSILRPPIPKQ 199
S++ S+ T P+ + + PP Y +P + A S+ PP P Q
Sbjct: 193 SLNTSSISTEPSPVQTSILKPPPMYPETASFPHRKIRSGAYSLYPPPQPSQ 243
>Z81147-11|CAL69739.1| 323|Caenorhabditis elegans Hypothetical
protein T09E11.12 protein.
Length = 323
Score = 29.1 bits (62), Expect = 4.6
Identities = 27/110 (24%), Positives = 41/110 (37%)
Frame = +2
Query: 413 IFISVKTTKHYQYTRLPIILKTWFQLAKEQTWFFTDTETKQHQNQTNGHMVNTNCSASHQ 592
+F V+T++ Y R+P I TW + + FF+ T + N S S
Sbjct: 80 LFCFVETSERYMDERVPSIASTWLRRC-DNGRFFSKTPLLNLNITYSTVYKNLEDSYSDL 138
Query: 593 RKHLCCKMSVEYDRFLESGKKWFCHFDDDXYVNVPRLVSVLQTLXAPRRL 742
+ Y +S W+ DDD Y + L L TL + L
Sbjct: 139 FRKSIFGFYYSYVHISKS-FDWYLKADDDTYFAMDHLREYLNTLDPSKPL 187
>Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical
protein M01G12.12 protein.
Length = 1579
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +2
Query: 686 VNVPRLVSVLQTLXAPRRLVSKVERL--FTSRSNIQKPTNKLCFR 814
+N+ VS +Q+L RR+ S++E L + S ++ T++ CFR
Sbjct: 729 INILDQVSEMQSLECHRRITSRIEELMDLQTLSFAKQMTDEACFR 773
>Z81492-10|CAB04029.2| 322|Caenorhabditis elegans Hypothetical
protein E03H4.3 protein.
Length = 322
Score = 28.7 bits (61), Expect = 6.1
Identities = 26/110 (23%), Positives = 40/110 (36%)
Frame = +2
Query: 413 IFISVKTTKHYQYTRLPIILKTWFQLAKEQTWFFTDTETKQHQNQTNGHMVNTNCSASHQ 592
IF V+T++ Y R+P I TW + + FF+ T + N S
Sbjct: 80 IFCFVETSERYYNDRVPSIAATWLRRC-DNGRFFSKTPLPSANMTYSTVYKNLEDSFFDL 138
Query: 593 RKHLCCKMSVEYDRFLESGKKWFCHFDDDXYVNVPRLVSVLQTLXAPRRL 742
+ Y + + W+ DDD Y + L L TL + L
Sbjct: 139 FRKSIFGFYYSY-MHISNSFDWYLKADDDTYFAMDHLREYLNTLDPSKPL 187
>Z68333-4|CAA92723.2| 271|Caenorhabditis elegans Hypothetical
protein C05C12.4 protein.
Length = 271
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 377 DIELNKNITLNDIFISVKTTKHYQYTRLPIILKTWFQLAKEQTWFFTDTETKQHQN 544
++ NK+ + + S ++Y RL I++ F + E W FT + KQH N
Sbjct: 137 EVVYNKSDSFFKVVGSKSCKIFWEYRRLVILVL--FAIILEMAWRFTKKQQKQHAN 190
>AY373340-1|AAQ76550.1| 1007|Caenorhabditis elegans BAM-2 protein.
Length = 1007
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 715 TNPTSTKKIGI*GRTSVYEPVKYTETNE*VMFSFGSPRRRWICIAEVTLKCYCC 876
T+ T T I + G + +P T+TN+ M+SF P++R C C
Sbjct: 291 TDKTITLSISVNGNIQLIDP---TDTNDDCMYSFDKPQKRLQETVSTRTMCVGC 341
>AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical
protein M01G12.12 protein.
Length = 1579
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +2
Query: 686 VNVPRLVSVLQTLXAPRRLVSKVERL--FTSRSNIQKPTNKLCFR 814
+N+ VS +Q+L RR+ S++E L + S ++ T++ CFR
Sbjct: 729 INILDQVSEMQSLECHRRITSRIEELMDLQTLSFAKQMTDEACFR 773
>AL023828-18|CAA19462.2| 742|Caenorhabditis elegans Hypothetical
protein Y17G7B.15b protein.
Length = 742
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 742 GI*GRTSVYEPVKYTETNE*VMFSFGSPRRRWICIAEVTLKCYCCSG 882
G T+ +E V+ NE V GSP +W+ I + C CSG
Sbjct: 358 GFSSSTTAFEQVRRVPGNE-VCADCGSPAPKWVSINLGVVLCIECSG 403
>AL023828-17|CAA19463.2| 826|Caenorhabditis elegans Hypothetical
protein Y17G7B.15a protein.
Length = 826
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 742 GI*GRTSVYEPVKYTETNE*VMFSFGSPRRRWICIAEVTLKCYCCSG 882
G T+ +E V+ NE V GSP +W+ I + C CSG
Sbjct: 442 GFSSSTTAFEQVRRVPGNE-VCADCGSPAPKWVSINLGVVLCIECSG 487
>AJ132699-1|CAA10735.1| 742|Caenorhabditis elegans centaurin beta
1B protein.
Length = 742
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 742 GI*GRTSVYEPVKYTETNE*VMFSFGSPRRRWICIAEVTLKCYCCSG 882
G T+ +E V+ NE V GSP +W+ I + C CSG
Sbjct: 358 GFSSSTTAFEQVRRVPGNE-VCADCGSPAPKWVSINLGVVLCIECSG 403
>AJ132698-1|CAA10734.1| 826|Caenorhabditis elegans centaurin beta
1A protein.
Length = 826
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 742 GI*GRTSVYEPVKYTETNE*VMFSFGSPRRRWICIAEVTLKCYCCSG 882
G T+ +E V+ NE V GSP +W+ I + C CSG
Sbjct: 442 GFSSSTTAFEQVRRVPGNE-VCADCGSPAPKWVSINLGVVLCIECSG 487
>AF016654-5|AAB66027.1| 348|Caenorhabditis elegans Hypothetical
protein C17A2.3 protein.
Length = 348
Score = 28.7 bits (61), Expect = 6.1
Identities = 25/108 (23%), Positives = 38/108 (35%)
Frame = +2
Query: 401 TLNDIFISVKTTKHYQYTRLPIILKTWFQLAKEQTWFFTDTETKQHQNQTNGHMVNTNCS 580
T IF V+T+ Y R+P + TW + FFT T + N +
Sbjct: 98 TSGQIFCFVETSTKYYKDRVPSVASTWLPRC-DHGRFFTKTHLPYPDIAYSTVYRNLRDT 156
Query: 581 ASHQRKHLCCKMSVEYDRFLESGKKWFCHFDDDXYVNVPRLVSVLQTL 724
+ + Y + W+ DDD +V + L L TL
Sbjct: 157 YDDLFRKSIFSLYYSYTS-ISKHFDWYLKTDDDTFVAMDHLREYLNTL 203
>AC024853-1|AAO21419.1| 1007|Caenorhabditis elegans Branching
abnormal protein 2 protein.
Length = 1007
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 715 TNPTSTKKIGI*GRTSVYEPVKYTETNE*VMFSFGSPRRRWICIAEVTLKCYCC 876
T+ T T I + G + +P T+TN+ M+SF P++R C C
Sbjct: 291 TDKTITLSISVNGNIQLIDP---TDTNDDCMYSFDKPQKRLQETVSTRTMCVGC 341
>Z81131-6|CAE17977.2| 734|Caenorhabditis elegans Hypothetical
protein T24D1.1b protein.
Length = 734
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 1/109 (0%)
Frame = +2
Query: 413 IFISVKTTKHYQYTRLPIILKTWFQLAKEQTWFFTDTETKQ-HQNQTNGHMVNTNCSASH 589
I +++ T Y TR + KTW Q + F T+ H++ + + +
Sbjct: 82 ILVAIMTAAKYVDTRAYNVWKTWAQHIPGRVLIFVAEGTESVHEDMPLIRLKGVDDTYPP 141
Query: 590 QRKHLCCKMSVEYDRFLESGKKWFCHFDDDXYVNVPRLVSVLQTLXAPR 736
Q+K + + + WF DDD Y+ L L+++ + +
Sbjct: 142 QKKSFAMVKWLAEN--MADEYDWFLRADDDLYIRGEELALFLRSVDSSK 188
>AY241925-2|AAO85273.1| 734|Caenorhabditis elegans chondroitin
disaccharide polymerase protein.
Length = 734
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 1/109 (0%)
Frame = +2
Query: 413 IFISVKTTKHYQYTRLPIILKTWFQLAKEQTWFFTDTETKQ-HQNQTNGHMVNTNCSASH 589
I +++ T Y TR + KTW Q + F T+ H++ + + +
Sbjct: 82 ILVAIMTAAKYVDTRAYNVWKTWAQHIPGRVLIFVAEGTESVHEDMPLIRLKGVDDTYPP 141
Query: 590 QRKHLCCKMSVEYDRFLESGKKWFCHFDDDXYVNVPRLVSVLQTLXAPR 736
Q+K + + + WF DDD Y+ L L+++ + +
Sbjct: 142 QKKSFAMVKWLAEN--MADEYDWFLRADDDLYIRGEELALFLRSVDSSK 188
>AY241925-1|AAO85274.1| 736|Caenorhabditis elegans chondroitin
disaccharide polymerase protein.
Length = 736
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 1/109 (0%)
Frame = +2
Query: 413 IFISVKTTKHYQYTRLPIILKTWFQLAKEQTWFFTDTETKQ-HQNQTNGHMVNTNCSASH 589
I +++ T Y TR + KTW Q + F T+ H++ + + +
Sbjct: 84 ILVAIMTAAKYVDTRAYNVWKTWAQHIPGRVLIFVAEGTESVHEDMPLIRLKGVDDTYPP 143
Query: 590 QRKHLCCKMSVEYDRFLESGKKWFCHFDDDXYVNVPRLVSVLQTLXAPR 736
Q+K + + + WF DDD Y+ L L+++ + +
Sbjct: 144 QKKSFAMVKWLAEN--MADEYDWFLRADDDLYIRGEELALFLRSVDSSK 190
>AB088397-1|BAC76780.1| 726|Caenorhabditis elegans chondroitin
synthase protein.
Length = 726
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 1/109 (0%)
Frame = +2
Query: 413 IFISVKTTKHYQYTRLPIILKTWFQLAKEQTWFFTDTETKQ-HQNQTNGHMVNTNCSASH 589
I +++ T Y TR + KTW Q + F T+ H++ + + +
Sbjct: 74 ILVAIMTAAKYVDTRAYNVWKTWAQHIPGRVLIFVAEGTESVHEDMPLIRLKGVDDTYPP 133
Query: 590 QRKHLCCKMSVEYDRFLESGKKWFCHFDDDXYVNVPRLVSVLQTLXAPR 736
Q+K + + + WF DDD Y+ L L+++ + +
Sbjct: 134 QKKSFAMVKWLAEN--MADEYDWFLRADDDLYIRGEELALFLRSVDSSK 180
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,434,645
Number of Sequences: 27780
Number of extensions: 394907
Number of successful extensions: 1208
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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