Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_L08
(843 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 37 0.017
11_06_0610 - 25449085-25453284 31 1.1
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 30 2.7
12_01_0292 + 2193309-2193338,2193565-2193640,2193744-2195203,219... 29 3.5
07_01_0479 + 3606663-3607448 29 3.5
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 3.5
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 4.6
11_04_0415 - 17395988-17396161,17397349-17397444,17397489-173980... 29 6.1
09_02_0603 - 11150739-11150746,11150791-11151340 29 6.1
06_01_0077 + 626126-626137,626222-627421 28 8.1
03_01_0515 - 3864796-3865425 28 8.1
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 37.1 bits (82), Expect = 0.017
Identities = 18/46 (39%), Positives = 18/46 (39%)
Frame = +2
Query: 578 PPXGGXSPXPXXXXXPPXXXXXXXPPPXFXXXXXXXGGGPPPPPXG 715
PP G P P PP PPP GG PPPPP G
Sbjct: 340 PPKGPPPPPPAKGPPPPPPPKGPSPPPP-PPPGGKKGGPPPPPPKG 384
Score = 32.7 bits (71), Expect = 0.38
Identities = 18/58 (31%), Positives = 18/58 (31%)
Frame = +3
Query: 543 PXXPXXXXGXXSPXGGVFPPXXXXGXPPXXXXXKXPPPPXFXXXXXXXGGXPPPPXXG 716
P P P G PP G PP PPP G PPPP G
Sbjct: 328 PPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGG 385
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = +2
Query: 578 PPXGGXSPXPXXXXXPPXXXXXXXPPPXFXXXXXXXGGGPPPPP 709
PP P PP PPP GPPPPP
Sbjct: 314 PPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPP 357
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/60 (30%), Positives = 18/60 (30%)
Frame = +3
Query: 528 PXXKXPXXPXXXXGXXSPXGGVFPPXXXXGXPPXXXXXKXPPPPXFXXXXXXXGGXPPPP 707
P P P P PP PP K PPPP G PPPP
Sbjct: 313 PPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPP-----PPPKGPSPPPP 367
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/60 (26%), Positives = 17/60 (28%)
Frame = +3
Query: 528 PXXKXPXXPXXXXGXXSPXGGVFPPXXXXGXPPXXXXXKXPPPPXFXXXXXXXGGXPPPP 707
P K P P +P PP G PP PPP PPP
Sbjct: 801 PSEKSPPTPAEESSPPTPEKSPSPPSGHEGTPPSPVKSSSPPPEAHVSSPPPEKSSSPPP 860
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/45 (33%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Frame = +2
Query: 578 PPXGGXSPXPXXXXXPPXXXXXXXPPPXFXXXXXXXGG-GPPPPP 709
PP G PP PPP G GPPPPP
Sbjct: 309 PPGAGAGAGTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPP 353
>12_01_0292 +
2193309-2193338,2193565-2193640,2193744-2195203,
2195479-2195505,2195794-2196024,2196523-2196692,
2197278-2197421,2198036-2198083,2198503-2198566
Length = 749
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/46 (32%), Positives = 16/46 (34%)
Frame = -3
Query: 703 GGGXPPXXXXXXXKXGGGGXXXXXXXGGXPXXXXGGXTPPXGEXXP 566
GGG + GGGG GG P GG P G P
Sbjct: 278 GGGGKKDAGGKQNQGGGGGNGKNGGGGGQPNNAKGGGAPNGGGNHP 323
>07_01_0479 + 3606663-3607448
Length = 261
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = +2
Query: 578 PPXGGXSPXPXXXXXPPXXXXXXXPPPXFXXXXXXXGGGPPPPP 709
PP G P PP PPP F G PPPPP
Sbjct: 213 PPMGPPQVRPGMPGGPPPGMRPGMPPPPFRP------GMPPPPP 250
Score = 28.7 bits (61), Expect = 6.1
Identities = 20/61 (32%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Frame = +1
Query: 532 FXRXPXXPXXFXGXFPPXGGXFPXXXXXXXPPXXXXXK--XPPPXXFXXXXXLXGGXPPP 705
F R P P F G PP G F PP PPP + G PPP
Sbjct: 187 FQRPPGVPPAFPGGPPPPPGPFMRGPPPMGPPQVRPGMPGGPPP-------GMRPGMPPP 239
Query: 706 P 708
P
Sbjct: 240 P 240
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = +2
Query: 578 PPXGGXSPXPXXXXXPPXXXXXXXPPPXFXXXXXXXGGGPPPPPXG 715
PP GG + P PP P GG PPPPP G
Sbjct: 1113 PPPGGITGVPPP---PPIGGLGGHQAPPAPPLPEGIGGVPPPPPVG 1155
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +3
Query: 579 PXGGVFPPXXXXGXPPXXXXXKXPPPPXFXXXXXXXGGXPPPP 707
P V PP PP PPPP PPPP
Sbjct: 628 PNHSVLPPPPPPPPPPSLPNRLVPPPPAPGIGNKFPAPPPPPP 670
>11_04_0415 -
17395988-17396161,17397349-17397444,17397489-17398026,
17398106-17398422
Length = 374
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/55 (30%), Positives = 17/55 (30%)
Frame = -3
Query: 706 GGGGXPPXXXXXXXKXGGGGXXXXXXXGGXPXXXXGGXTPPXGEXXPXXXXGXXG 542
GGGG P G GG GG P GG G P G G
Sbjct: 10 GGGGGGPRGFGGGGPRGFGGGGPRGFGGGGPRGFGGGGPRGFGGSKPRRGNGELG 64
>09_02_0603 - 11150739-11150746,11150791-11151340
Length = 185
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +2
Query: 623 PPXXXXXXXPPPXFXXXXXXXGGGPPPPPXG 715
PP PPP G PPPPP G
Sbjct: 38 PPPFGFPPPPPPGSTFVPLPQSGVPPPPPLG 68
>06_01_0077 + 626126-626137,626222-627421
Length = 403
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 317 WFPKCSVVRYVFNYYLXXYSFGPPVL*STVRVDKKHQESK 198
WF C + + ++Y+ +SFG PVL R+D + +K
Sbjct: 270 WFVVCGDMLLIVDHYIS-FSFGAPVLYRPYRLDMSTKPAK 308
>03_01_0515 - 3864796-3865425
Length = 209
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/44 (29%), Positives = 13/44 (29%)
Frame = +2
Query: 578 PPXGGXSPXPXXXXXPPXXXXXXXPPPXFXXXXXXXGGGPPPPP 709
P P P PP PPP PPPPP
Sbjct: 77 PSVTSSPPPPPLPPPPPPPAASPPPPPPSPPPPSPVKSSPPPPP 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,082,696
Number of Sequences: 37544
Number of extensions: 386158
Number of successful extensions: 1101
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -