Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_L06
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    26   6.6  
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    26   8.7  

>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 33/122 (27%), Positives = 46/122 (37%), Gaps = 4/122 (3%)
 Frame = +1

Query: 532 IGSAPLTSITKIDAQVRGGETRQDYKDTRRX-PLEAPSCALLFRPCRLRILSASPS---D 699
           +GS PL + T   +   G   R      R   P  +PS + L  P  L      P    D
Sbjct: 325 VGSVPLPAPTSSQSLRLGSLHRSRSPSPRSGRPRRSPSPSHLSIPSTLPPADGVPKPTPD 384

Query: 700 XLLXRXXXXPYLTLVGISVPVYSRSLQAGLCARTPRSTPTXAPYPVTXRLXSNPVKPNYR 879
               R    P  T+   S+ VYSR+L  G   R+ R     + +     + S  +  NYR
Sbjct: 385 GFPRRFERDP--TIPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSVQSLILNHNYR 442

Query: 880 PG 885
            G
Sbjct: 443 HG 444


>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 793 HTAQLGANGYTPELRYLP 740
           HTA LGA  + P+LR  P
Sbjct: 164 HTAALGARTFAPDLRLAP 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,426,721
Number of Sequences: 5004
Number of extensions: 64488
Number of successful extensions: 135
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)