Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_L04
         (912 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.9  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   2.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   5.1  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   6.7  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   6.7  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   6.7  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   6.7  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   6.7  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   6.7  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   6.7  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   6.7  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 451 LADYKATLPILKSYPKVTVEVKWEL-QSEHGDLVCV 555
           + D+  TLP+ +  P++  + +W++   E G L+ V
Sbjct: 497 MIDFAKTLPLPQHLPRIHHDAEWKVGNHEDGYLIGV 532


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 451 LADYKATLPILKSYPKVTVEVKWEL-QSEHGDLVCV 555
           + D+  TLP+ +  P++  + +W++   E G L+ V
Sbjct: 412 MIDFAKTLPLPQHLPRIHHDAEWKVGNHEDGYLIGV 447


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 451 LADYKATLPILKSYPKVTVEVKWEL-QSEHGDLVCV 555
           + D+  TLP+ +  P++  + +W++   E G L+ V
Sbjct: 731 MIDFAKTLPLPQHLPRIHHDAEWKVGNHEDGYLIGV 766


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 100 KLFFIDPNLILLTKMLFFITAAVLLASAEA 189
           K  F   NLIL T ++ F+   V    AEA
Sbjct: 232 KTLFYTVNLILPTVLISFLCVLVFYLPAEA 261


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 243 ERMRRVVQSLYTEEKHRRHNRPAVYTIAQHRSHKYRSSR 359
           ER+RR  + +  +E+ R H R     I ++   + R  +
Sbjct: 34  ERLRRRREWMIQQEREREHERLKKKMILEYELRRAREKK 72


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 243 ERMRRVVQSLYTEEKHRRHNRPAVYTIAQHRSHKYRSSR 359
           ER+RR  + +  +E+ R H R     I ++   + R  +
Sbjct: 34  ERLRRRREWMIQQEREREHERLKKKMILEYELRRAREKK 72


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 243 ERMRRVVQSLYTEEKHRRHNRPAVYTIAQHRSHKYRSSR 359
           ER+RR  + +  +E+ R H R     I ++   + R  +
Sbjct: 34  ERLRRRREWMIQQEREREHERLKKKMILEYELRRAREKK 72


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 243 ERMRRVVQSLYTEEKHRRHNRPAVYTIAQHRSHKYRSSR 359
           ER+RR  + +  +E+ R H R     I ++   + R  +
Sbjct: 34  ERLRRRREWMIQQEREREHERLKKKMILEYELRRAREKK 72


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 243 ERMRRVVQSLYTEEKHRRHNRPAVYTIAQHRSHKYRSSR 359
           ER+RR  + +  +E+ R H R     I ++   + R  +
Sbjct: 34  ERLRRRREWMIQQEREREHERLKKKMILEYELRRAREKK 72


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 243 ERMRRVVQSLYTEEKHRRHNRPAVYTIAQHRSHKYRSSR 359
           ER+RR  + +  +E+ R H R     I ++   + R  +
Sbjct: 34  ERLRRRREWMIQQEREREHERLKKKMILEYELRRAREKK 72


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 243 ERMRRVVQSLYTEEKHRRHNRPAVYTIAQHRSHKYRSSR 359
           ER+RR  + +  +E+ R H R     I ++   + R  +
Sbjct: 34  ERLRRRREWMIQQEREREHERLKKKMILEYELRRAREKK 72


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 243 ERMRRVVQSLYTEEKHRRHNRPAVYTIAQHRSHKYRSSR 359
           ER+RR  + +  +E+ R H R     I ++   + R  +
Sbjct: 34  ERLRRRREWMIQQEREREHERLKKKMILEYELRRAREKK 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,766
Number of Sequences: 438
Number of extensions: 5008
Number of successful extensions: 17
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)