Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_L01
(943 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0484 + 8805053-8805538 45 8e-05
03_02_0483 - 8804021-8804485 44 1e-04
03_02_0485 - 8808139-8808618 42 5e-04
03_02_0478 + 8775892-8776377 39 0.005
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 37 0.020
01_01_0231 + 1951047-1951499 36 0.035
01_01_0229 - 1943473-1943922 36 0.035
02_05_0159 - 26368562-26369239,26371374-26371853 32 0.58
01_01_0228 + 1940149-1940649 30 2.3
03_02_0771 + 11041882-11042073,11042669-11042851,11042946-110430... 29 5.4
01_01_0227 + 1933247-1933699 29 5.4
11_05_0098 + 19041790-19041894,19042363-19043274,19043605-19043868 29 7.1
>03_02_0484 + 8805053-8805538
Length = 161
Score = 45.2 bits (102), Expect = 8e-05
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 17/149 (11%)
Frame = +1
Query: 226 DPFSVFSRDPFFRDPIKYIRQATSPIEDSHGIEGVYSDSEI----KVDGKKV-EVHL--- 381
DPFS+ DPF P +++ I S G S++ ++D K+ E H+
Sbjct: 11 DPFSLDLWDPFDGFPFGSGSRSSGSIFPSFP-RGTSSETAAFAGARIDWKETPEAHVFKA 69
Query: 382 DVQNFTPEQIQVKTV-GNEIMIEGKKEIKRE---DGWTR-----SHFERRFLLPEGFPPE 534
DV E+++V+ GN + I G++ ++E D W R F RRF LPE PE
Sbjct: 70 DVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 129
Query: 535 RVECHLDKGKLKLIAFRAEPLQERAVPIQ 621
+++ ++ G L + + EP + IQ
Sbjct: 130 QIKASMENGVLTVTVPKEEPKKPDVKSIQ 158
>03_02_0483 - 8804021-8804485
Length = 154
Score = 44.4 bits (100), Expect = 1e-04
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 13/145 (8%)
Frame = +1
Query: 226 DPFSVFSRDPFFRDPIKYIRQATSPIEDSHGIEGVYSDSEIKVDGKKV-EVHL---DVQN 393
DPFS+ DPF D + + S ++ ++ + ++D K+ E H+ DV
Sbjct: 11 DPFSLDLWDPF--DGFPFGSGSGSLFPRANSDAAAFAGA--RIDWKETPEAHVFKADVPG 66
Query: 394 FTPEQIQVKTV-GNEIMIEG---KKEIKREDGWTR-----SHFERRFLLPEGFPPERVEC 546
E+++V+ GN + I G K++ ++ D W R F RRF LPE PE+++
Sbjct: 67 LKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKA 126
Query: 547 HLDKGKLKLIAFRAEPLQERAVPIQ 621
++ G L + + EP + IQ
Sbjct: 127 SMENGVLTVTVPKEEPKKPDVKSIQ 151
>03_02_0485 - 8808139-8808618
Length = 159
Score = 42.3 bits (95), Expect = 5e-04
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 13/104 (12%)
Frame = +1
Query: 349 KVDGKKV-EVHL---DVQNFTPEQIQVKTV-GNEIMIEGKKEIKRE---DGWTR-----S 489
++D K+ EVH+ DV E+++V+ GN + I G++ ++E D W R
Sbjct: 53 RIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSG 112
Query: 490 HFERRFLLPEGFPPERVECHLDKGKLKLIAFRAEPLQERAVPIQ 621
F RRF LPE PE+++ ++ G L + + EP + IQ
Sbjct: 113 KFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQ 156
>03_02_0478 + 8775892-8776377
Length = 161
Score = 39.1 bits (87), Expect = 0.005
Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 17/149 (11%)
Frame = +1
Query: 226 DPFSVFSRDPFFRDPIKYIRQATSPIEDSHGIEGVYSDSEI----KVDGKKV-EVHL--- 381
DPFS+ DPF P ++ I S G S++ ++D K+ E H+
Sbjct: 11 DPFSLDLWDPFDGFPFGSGGSSSGSIFPSFP-RGASSETAAFAGARIDWKETPEAHVFKA 69
Query: 382 DVQNFTPEQIQVKTV-GNEIMIEGKKEIKRE---DGWTR-----SHFERRFLLPEGFPPE 534
DV E+++V+ GN + I G++ ++E D W R F RRF LP+ PE
Sbjct: 70 DVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPE 129
Query: 535 RVECHLDKGKLKLIAFRAEPLQERAVPIQ 621
+++ ++ G L + + E + IQ
Sbjct: 130 QIKASMENGVLTVTVPKEEAKKPDVKSIQ 158
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 37.1 bits (82), Expect = 0.020
Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 13/135 (9%)
Frame = +1
Query: 226 DPFSVFSRDPFFRDPIKYIRQATSPIEDSHGIEGVYSDSEIKVDGKKV-EVHL---DVQN 393
DPFS+ DPF + + ATS + + + + ++D K+ E H+ D+
Sbjct: 11 DPFSLDLWDPF-DSVFRSVVPATSDNDTA-------AFANARIDWKETPESHVFKADLPG 62
Query: 394 FTPEQIQVKTV-GNEIMIEGKKEIKREDG---WTR-----SHFERRFLLPEGFPPERVEC 546
E+++V+ GN ++I G++ ++ED W R F RRF LPE ++V+
Sbjct: 63 VKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKA 122
Query: 547 HLDKGKLKLIAFRAE 591
L+ G L + +AE
Sbjct: 123 GLENGVLTVTVPKAE 137
>01_01_0231 + 1951047-1951499
Length = 150
Score = 36.3 bits (80), Expect = 0.035
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 13/135 (9%)
Frame = +1
Query: 226 DPFSVFSRDPFFRDPIKYIRQATSPIEDSHGIEGVYSDSEIKVDGKKV-EVHL---DVQN 393
DPFS+ DPF + + ATS + + + + ++D K+ E H+ D+
Sbjct: 11 DPFSLDLWDPF-DSVFRSVVPATSDNDTA-------AFANARIDWKETPESHVFKADLPG 62
Query: 394 FTPEQIQVKTV-GNEIMIEGKKEIKREDG---WTR-----SHFERRFLLPEGFPPERVEC 546
E+++V+ GN ++I G++ ++ED W R F RRF LPE ++V+
Sbjct: 63 VKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKA 122
Query: 547 HLDKGKLKLIAFRAE 591
++ G L + +AE
Sbjct: 123 GMENGVLTVTVPKAE 137
>01_01_0229 - 1943473-1943922
Length = 149
Score = 36.3 bits (80), Expect = 0.035
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 15/129 (11%)
Frame = +1
Query: 250 DPF--FRDPIKYIRQATSPIEDSHGIEGVYSDSEIKVDGKKV-EVHL---DVQNFTPEQI 411
DPF F DP + ++ P + +VD K+ E H+ D+ E++
Sbjct: 11 DPFADFWDPFDGVFRSLVPATSDRDTAAF---ANARVDWKETPESHVFKADLPGVKKEEV 67
Query: 412 QVKTV-GNEIMIEGKKEIKREDG---WTR-----SHFERRFLLPEGFPPERVECHLDKGK 564
+V+ GN ++I G++ ++ED W R F RRF LPE ++V+ ++ G
Sbjct: 68 KVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGV 127
Query: 565 LKLIAFRAE 591
L + +AE
Sbjct: 128 LTVTVPKAE 136
>02_05_0159 - 26368562-26369239,26371374-26371853
Length = 385
Score = 32.3 bits (70), Expect = 0.58
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = -2
Query: 642 LTVYRFLLNWHRPLLQRFSSKGDKLQLPFIQVTLYSFRRETFRQKEPSLEV 490
LT+ RFLL+W R R ++G LP Q Y R ET R++ S+ +
Sbjct: 184 LTLARFLLSWAR-THARIRAQGKATPLPMAQYLAYFQRPETTRKRVRSVPI 233
>01_01_0228 + 1940149-1940649
Length = 166
Score = 30.3 bits (65), Expect = 2.3
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
Frame = +1
Query: 403 EQIQVKT-VGNEIMIEGKKEIKREDGWTRSH--------FERRFLLPEGFPPERVECHLD 555
E+++V+ GN ++I G++ ++RE+ RSH F RF LP+ + V +D
Sbjct: 65 EEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMD 124
Query: 556 KGKL 567
G L
Sbjct: 125 GGML 128
>03_02_0771 +
11041882-11042073,11042669-11042851,11042946-11043020,
11043089-11043283,11043380-11043478,11044189-11044352,
11045676-11045742,11045842-11045894,11046287-11046413,
11047439-11047627,11048201-11048287,11048411-11048565,
11048814-11048933,11049043-11049268,11049729-11049788,
11049877-11050050,11050138-11050247,11050417-11050582
Length = 813
Score = 29.1 bits (62), Expect = 5.4
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Frame = +1
Query: 385 VQNFTPEQIQVKTVGNEIMIEGKKEIKREDGWTRSHFERRFLLPEGFP---PERVECHLD 555
VQ+F E + KT E ++GK+ + W +++ +PE FP ER+E +LD
Sbjct: 666 VQSFASEHL--KTPLGE-PVKGKQNKSNTELWVEKFYKKVTTMPEPFPHELVERLEEYLD 722
Query: 556 KGKLKLIAFRAEPLQERAVPIQEKS 630
+ + +L+ + R V + S
Sbjct: 723 RLEGQLVDLSSLLYDHRLVDAYQNS 747
>01_01_0227 + 1933247-1933699
Length = 150
Score = 29.1 bits (62), Expect = 5.4
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 493 FERRFLLPEGFPPERVECHLDKGKLKLIAFRAEPL--QERAVPI 618
F+RRF LP G ++V +D G L + + E Q +A+PI
Sbjct: 105 FQRRFRLPRGARVDQVSASMDNGVLTVTVPKEETKKPQLKAIPI 148
>11_05_0098 + 19041790-19041894,19042363-19043274,19043605-19043868
Length = 426
Score = 28.7 bits (61), Expect = 7.1
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 254 LSSAIRLSTSGKPPHQLKTVMASKEYTQIQRSKLTARKLKFTWMC 388
+S A RL PP L+ +++ + + R+ + +RK K W C
Sbjct: 24 ISQAFRLHRL--PPDVLRVILSQLSFKEAARTSVVSRKWKRLWRC 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,707,912
Number of Sequences: 37544
Number of extensions: 327428
Number of successful extensions: 912
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2706104940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -