Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_K23
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.5  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   8.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 630 PXPPKRXGXXGSPXGPAPKXKXXXPPXKPPPP 725
           P PP      G P  P P       P  PPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
 Frame = +3

Query: 582 GKPXKXGXAPXXXKRXPXPPKRXGXXGS-PXGPAPKXKXXXPPXKPPPPXGK 734
           GKP     +       P PP R    GS P  P  +     PP +  P  G+
Sbjct: 323 GKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGR 374


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
 Frame = -2

Query: 721 GGGFXGGXXXXFLGAGPXGXPXXPXLFGGXGXL---FXXXGAXPXFXGFPG 578
           GGGF G       G G  G P  P  FGG G         G    F G PG
Sbjct: 187 GGGFGG------FGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPG 231



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = -2

Query: 724 GGGGFXGGXXXXFLGAGPXGXPXXPXLFGGXG 629
           G GGF GG      G GP G    P   GG G
Sbjct: 243 GPGGFGGGLGG--FGGGPGGFGGGPGGHGGPG 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,277,987
Number of Sequences: 5004
Number of extensions: 12159
Number of successful extensions: 46
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)