Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_K20
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    42   2e-04
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    29   0.93 
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    27   2.8  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    27   2.8  
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation...    27   3.8  
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    27   3.8  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   8.7  

>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 27/108 (25%), Positives = 52/108 (48%)
 Frame = +3

Query: 306 PFTLILSXNKVINHVMEKGNKRLARQLVEKAFENIKRKQIERYHLASTPEEKAKIELNPK 485
           PF +  +   ++N +M  G K  A ++V  A   I+++  E                NP 
Sbjct: 119 PFQVDSTVQHLVNLIMRDGKKAKAEKIVATALSIIQKETGE----------------NPI 162

Query: 486 DILYKAVENCKPLLQLQPIKRGGITYQVPGPITEKRSLFLAIKWLLXD 629
           D+L +A+    PL++L   KR   + + P P+ E++   +A++W+L +
Sbjct: 163 DVLKQAIAEISPLMKLVSAKRFNKSVEFPMPLKERQRRRIALQWILGE 210


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 19/79 (24%), Positives = 36/79 (45%)
 Frame = +3

Query: 333 KVINHVMEKGNKRLARQLVEKAFENIKRKQIERYHLASTPEEKAKIELNPKDILYKAVEN 512
           ++IN +        A Q++E+ +  ++R +++     S  + K +   N    L   +E 
Sbjct: 283 ELINQIKSAEELDSAIQVLEERYRTMQRDEVKFQSAMSGMKSKMESRTNLMKQLQVNIEE 342

Query: 513 CKPLLQLQPIKRGGITYQV 569
            +  LQL   KR  + YQV
Sbjct: 343 KESQLQLLKEKRDSLKYQV 361


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 25/92 (27%), Positives = 43/92 (46%)
 Frame = +3

Query: 198 KIQYLEKKIK*NSLQIRI*RTEQLYL*SHLRFLKRLPFTLILSXNKVINHVMEKGNKRLA 377
           +I +LEK+ +  S+  +I + ++      LR L+ L      S  + IN V+   +   A
Sbjct: 619 RIDFLEKENRPKSVNKKILQQDKSKSMIELRCLRLLEKQR--SLRETINSVIPHSDSLAA 676

Query: 378 RQLVEKAFENIKRKQIERYHLASTPEEKAKIE 473
             L    F N+KR+ ++  +L     EK K E
Sbjct: 677 GNL-RLMFRNVKRQTMQEANLVLALAEKQKTE 707


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +3

Query: 429 RYHLASTPEEKAKIELNPKDILYKAVENCKPLLQLQPI 542
           +YH+   P EK +     K +  + ++NCK ++   P+
Sbjct: 448 QYHIDHCPAEKGETYQLAKTLGQQLIDNCKSVIDAPPV 485


>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
           factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 321

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +3

Query: 390 EKAFENIKRKQIERYHLASTPEEKAKIELNPKDILYKAVENCKPLLQLQPIKRG 551
           +K  EN+ R+ I  Y    T +    I      I +   E C  +  +Q IK G
Sbjct: 256 QKQIENVLRRYIVEYVTCKTCKSPDTILTKENRIFFMTCEACGSVRSVQAIKTG 309


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
 Frame = +3

Query: 402 ENIKRKQIERYHLASTPEEKA------KIELNPKDILYKAVENCKPLLQLQPIK 545
           E  + K +ER  LAS+ EEK       KI+L P ++L K V   +      P++
Sbjct: 176 EGTRSKDVERQVLASSAEEKRLIFVINKIDLVPSEVLNKWVTYLRNFFPTIPMR 229


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +3

Query: 330 NKVINHVMEKGNKRLARQLVEKAFENIKRKQIERY 434
           N ++ HV+E   +    +++EK F NI +  ++++
Sbjct: 658 NYLVQHVLELNIQPYTERIIEKFFGNICKLSLQKF 692


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,366,482
Number of Sequences: 5004
Number of extensions: 66385
Number of successful extensions: 208
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)