Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_K20
         (928 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC000241-1|AAH00241.1|  242|Homo sapiens mitochondrial ribosomal...   114   4e-25
AK222995-1|BAD96715.1|  242|Homo sapiens mitochondrial ribosomal...   112   2e-24
AB011118-1|BAA25472.2| 1919|Homo sapiens KIAA0546 protein protein.     31   5.9  

>BC000241-1|AAH00241.1|  242|Homo sapiens mitochondrial ribosomal
           protein S7 protein.
          Length = 242

 Score =  114 bits (275), Expect = 4e-25
 Identities = 63/151 (41%), Positives = 90/151 (59%), Gaps = 1/151 (0%)
 Frame = +3

Query: 330 NKVINHVMEKGNKRLARQLVEKAFENIKRKQIERYHLASTPEEKAKIELNPKDILYKAVE 509
           +K  N +M  GNK LAR L+ +  E +KRKQ E+YH AS  EE+A IE NP  I ++A++
Sbjct: 92  SKFTNMMMIGGNKVLARSLMIQTLEAVKRKQFEKYHAASA-EEQATIERNPYTIFHQALK 150

Query: 510 NCKPLLQLQPIKRGGITYQVPGPITEKRSLFLAIKWLLXDNR*KR-KNCSFP*AVCLGTP 686
           NC+P++ L PI +GG  YQVP P+ ++R  FLA+KW++ + R K+ +    P  +     
Sbjct: 151 NCEPMIGLVPILKGGRFYQVPVPLPDRRRRFLAMKWMITECRDKKHQRTLMPEKLSHKLL 210

Query: 687 *SFKPYWXSCKEKPDXXRQXEANRAFAXXRW 779
            +F       K K D  +  EANRA A  RW
Sbjct: 211 EAFHNQGPVIKRKHDLHKMAEANRALAHYRW 241


>AK222995-1|BAD96715.1|  242|Homo sapiens mitochondrial ribosomal
           protein S7 variant protein.
          Length = 242

 Score =  112 bits (270), Expect = 2e-24
 Identities = 62/151 (41%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
 Frame = +3

Query: 330 NKVINHVMEKGNKRLARQLVEKAFENIKRKQIERYHLASTPEEKAKIELNPKDILYKAVE 509
           +K  N +M  GNK LAR L+ +  E +KRKQ E+YH AS  EE+A IE NP  I ++A++
Sbjct: 92  SKFTNMMMIGGNKVLARSLMIQTLEAVKRKQFEKYHAASA-EEQATIERNPYTIFHQALK 150

Query: 510 NCKPLLQLQPIKRGGITYQVPGPITEKRSLFLAIKWLLXDNR*KR-KNCSFP*AVCLGTP 686
           NC+P++ L PI +GG  YQVP P+ ++R  FLA+KW++ + R K+ +    P  +     
Sbjct: 151 NCEPMIGLVPILKGGRFYQVPVPLPDRRRRFLAMKWMITECRDKKHQRTLMPEKLSHKLL 210

Query: 687 *SFKPYWXSCKEKPDXXRQXEANRAFAXXRW 779
            +F       K   D  +  EANRA A  RW
Sbjct: 211 EAFHNQGPVIKRSHDLHKMAEANRALAHYRW 241


>AB011118-1|BAA25472.2| 1919|Homo sapiens KIAA0546 protein protein.
          Length = 1919

 Score = 31.1 bits (67), Expect = 5.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 221 DQVKLIADSDLKNRATVPVKPPTVSETSSVYFDP 322
           ++V +  DS+  + A  PV+PP  SE S  YF P
Sbjct: 538 EEVAMDTDSETSSPAPSPVQPPFFSECSLGYFSP 571


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,436,975
Number of Sequences: 237096
Number of extensions: 2126765
Number of successful extensions: 4111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4105
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12103451996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)