Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_K17
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces pom...   122   5e-29
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    30   0.51 
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    29   1.2  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    29   1.2  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    28   2.1  
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    26   6.3  

>SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score =  122 bits (295), Expect = 5e-29
 Identities = 60/133 (45%), Positives = 84/133 (63%)
 Frame = +3

Query: 300 MKMFSNASETVKKFVSNEEYKLVLVVRTDLSMGKGKIAAQCCHAAVGAFEKALKKDPEGL 479
           + M    S      ++  + K+VLVVRTDL M KGKIAAQC HAA+  ++ A   DP+ +
Sbjct: 72  LDMLKGNSSLAALALAEGQTKMVLVVRTDLGMTKGKIAAQCAHAALACYKIASAVDPDLV 131

Query: 480 KAWQMTGQAKVALKIDSLEEIKKIADNAKKMGLITSLIRDAGRTQIAPNSITVLGVGPAP 659
           + W+  GQAK+ L+  + E ++ +   A  +GL   +I DAGRTQIA  S TVLG+GP P
Sbjct: 132 RIWENAGQAKITLQAQTEETLELLQAQAMSLGLCARVIHDAGRTQIASGSATVLGIGPGP 191

Query: 660 KDIIDKVTGHLKL 698
             +I++VTG LKL
Sbjct: 192 VSVINEVTGSLKL 204


>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 153 NIFNYLHTFCLLKTLKISPKHKMTFDMSFYTGLSCGICIGLSI 281
           +IF+  +   LL+T   +P  + +  MSF+  L  GIC GL++
Sbjct: 55  HIFHGKNRHQLLRTCHFTPSKRHSA-MSFFEALGAGICAGLAV 96


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 539 NKKNCRQCKENGLNHIF 589
           +KKN  Q +ENGLNH+F
Sbjct: 166 SKKNKSQLEENGLNHLF 182


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 20/88 (22%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
 Frame = +3

Query: 390 SMGKGKIAAQCCHAAVGAFEKALKKDPEGLKAWQMTGQ--AKVALKIDSLEEIKKIA--- 554
           S+G  ++ A+  H A+  F+ AL+  P+   AW   G+  A+    + +L+   + +   
Sbjct: 655 SLGVLELNAKNFHKAIVHFQSALRISPKDTNAWSGLGEAYARSGRYVSALKAFNRASILD 714

Query: 555 -DNAKKMGLITSLIRDAGRTQIAPNSIT 635
            D+      I +L +D G  ++A ++++
Sbjct: 715 PDDWYVKYFIATLEKDMGEYEVAVSTLS 742


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1317

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +3

Query: 525  DSLEEIK-KIADNAKKMGLITSLIRDAGRTQI 617
            D+L ++K +++ N K + LITSLI++ G+  +
Sbjct: 932  DNLNDLKAQVSANQKGINLITSLIKEYGKNSV 963


>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 259 VFVSAYQYLRFEST*RCFLMPVKLLKSLYRMKSTNW 366
           V+V  Y +L      +CF +  K +++LYR  S  W
Sbjct: 36  VWVEIYHHLEKGLLQQCFNLVKKNMEALYRQSSFGW 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,195,242
Number of Sequences: 5004
Number of extensions: 64833
Number of successful extensions: 176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)