Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_K07
(956 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 38 0.011
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 38 0.011
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 38 0.011
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 38 0.014
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 38 0.014
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 36 0.032
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 36 0.032
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 36 0.032
U80838-2|AAL02517.1| 297|Caenorhabditis elegans Abnormal cell l... 34 0.17
U80838-1|AAU05570.1| 597|Caenorhabditis elegans Abnormal cell l... 34 0.17
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 32 0.53
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 32 0.70
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 32 0.70
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.2
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 30 2.8
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 30 2.8
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 29 4.9
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 29 4.9
AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen prot... 29 4.9
Z70271-3|CAA94234.1| 358|Caenorhabditis elegans Hypothetical pr... 29 6.5
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 6.5
Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 8.6
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 28 8.6
U40059-1|AAA81138.3| 867|Caenorhabditis elegans Hypothetical pr... 28 8.6
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 8.6
AY714779-1|AAU14146.1| 1338|Caenorhabditis elegans UNC-89 protein. 28 8.6
AF003131-8|AAP68959.1| 1393|Caenorhabditis elegans Uncoordinated... 28 8.6
AF003131-7|AAV34798.1| 1396|Caenorhabditis elegans Uncoordinated... 28 8.6
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 28 8.6
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 28 8.6
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 37.9 bits (84), Expect = 0.011
Identities = 43/164 (26%), Positives = 46/164 (28%), Gaps = 1/164 (0%)
Frame = -1
Query: 857 GXPXXPPXEGXPGT-GXXLXRXXXRTEKGXPKXXPXGXTXPGXXKTXPGRPPRXXTPXXX 681
G P P G PGT G T K P G P PG P TP
Sbjct: 117 GKPGRPGAPGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRP 176
Query: 680 XXTXERGAXGXXPXXGPXPXGXPPVXGPXKXXWPXXPPXXRXXLXXXPPEXEDKXXXPPC 501
G+ G P P P G GP P P P E D PP
Sbjct: 177 GTDAAPGSPG--PRGPPGPAGEAGAPGPAGE--PGTPAISEPLTPGAPGEPGDS--GPPG 230
Query: 500 RXRTXLAPGVXAGXPKKXPXXXTXAPNAXXRIXXPSPTPPPXNP 369
APG G P P+ + S P P P
Sbjct: 231 PPGPPGAPG-NDGPPGPPGPKGAPGPDGPPGVDGQSGPPGPPGP 273
Score = 33.5 bits (73), Expect = 0.23
Identities = 35/135 (25%), Positives = 36/135 (26%)
Frame = -1
Query: 857 GXPXXPPXEGXPGTGXXLXRXXXRTEKGXPKXXPXGXTXPGXXKTXPGRPPRXXTPXXXX 678
G P P G PG R G P P G P PG TP
Sbjct: 156 GPPGPPGAPGDPGEAGTPGRPGTDAAPGSP--GPRGPPGPAGEAGAPGPAGEPGTPAISE 213
Query: 677 XTXERGAXGXXPXXGPXPXGXPPVXGPXKXXWPXXPPXXRXXLXXXPPEXEDKXXXPPCR 498
GA G GP PP G P PP + P D PP
Sbjct: 214 PLTP-GAPGEPGDSGPPGPPGPP--GAPGNDGPPGPPGPKGAPGPDGPPGVDGQSGPPGP 270
Query: 497 XRTXLAPGVXAGXPK 453
PG PK
Sbjct: 271 PGPAGTPGEKGICPK 285
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 37.9 bits (84), Expect = 0.011
Identities = 46/173 (26%), Positives = 50/173 (28%), Gaps = 1/173 (0%)
Frame = -1
Query: 857 GXPXXPPXEGXPGT-GXXLXRXXXRTEKGXPKXXPXGXTXPGXXKTXPGRPPRXXTPXXX 681
G P P G PGT G T K P G P PG P TP
Sbjct: 112 GKPGRPGAPGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRP 171
Query: 680 XXTXERGAXGXXPXXGPXPXGXPPVXGPXKXXWPXXPPXXRXXLXXXPPEXEDKXXXPPC 501
G+ G P P P G GP P P P E D PP
Sbjct: 172 GTDAAPGSPG--PRGPPGPAGEAGAPGPAGE--PGTPAISEPLTPGAPGEPGDS--GPPG 225
Query: 500 RXRTXLAPGVXAGXPKKXPXXXTXAPNAXXRIXXPSPTPPPXNPXXXTTPXDQ 342
APG G P P AP + PP P TP ++
Sbjct: 226 PPGPPGAPG-NDGPP--GPPGPKGAPGPDGPPGADGQSGPPGPPGPAGTPGEK 275
Score = 33.9 bits (74), Expect = 0.17
Identities = 35/135 (25%), Positives = 36/135 (26%)
Frame = -1
Query: 857 GXPXXPPXEGXPGTGXXLXRXXXRTEKGXPKXXPXGXTXPGXXKTXPGRPPRXXTPXXXX 678
G P P G PG R G P P G P PG TP
Sbjct: 151 GPPGPPGAPGDPGEAGTPGRPGTDAAPGSP--GPRGPPGPAGEAGAPGPAGEPGTPAISE 208
Query: 677 XTXERGAXGXXPXXGPXPXGXPPVXGPXKXXWPXXPPXXRXXLXXXPPEXEDKXXXPPCR 498
GA G GP PP G P PP + P D PP
Sbjct: 209 PLTP-GAPGEPGDSGPPGPPGPP--GAPGNDGPPGPPGPKGAPGPDGPPGADGQSGPPGP 265
Query: 497 XRTXLAPGVXAGXPK 453
PG PK
Sbjct: 266 PGPAGTPGEKGICPK 280
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 37.9 bits (84), Expect = 0.011
Identities = 46/173 (26%), Positives = 50/173 (28%), Gaps = 1/173 (0%)
Frame = -1
Query: 857 GXPXXPPXEGXPGT-GXXLXRXXXRTEKGXPKXXPXGXTXPGXXKTXPGRPPRXXTPXXX 681
G P P G PGT G T K P G P PG P TP
Sbjct: 112 GKPGRPGAPGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRP 171
Query: 680 XXTXERGAXGXXPXXGPXPXGXPPVXGPXKXXWPXXPPXXRXXLXXXPPEXEDKXXXPPC 501
G+ G P P P G GP P P P E D PP
Sbjct: 172 GTDAAPGSPG--PRGPPGPAGEAGAPGPAGE--PGTPAISEPLTPGAPGEPGDS--GPPG 225
Query: 500 RXRTXLAPGVXAGXPKKXPXXXTXAPNAXXRIXXPSPTPPPXNPXXXTTPXDQ 342
APG G P P AP + PP P TP ++
Sbjct: 226 PPGPPGAPG-NDGPP--GPPGPKGAPGPDGPPGADGQSGPPGPPGPAGTPGEK 275
Score = 33.9 bits (74), Expect = 0.17
Identities = 35/135 (25%), Positives = 36/135 (26%)
Frame = -1
Query: 857 GXPXXPPXEGXPGTGXXLXRXXXRTEKGXPKXXPXGXTXPGXXKTXPGRPPRXXTPXXXX 678
G P P G PG R G P P G P PG TP
Sbjct: 151 GPPGPPGAPGDPGEAGTPGRPGTDAAPGSP--GPRGPPGPAGEAGAPGPAGEPGTPAISE 208
Query: 677 XTXERGAXGXXPXXGPXPXGXPPVXGPXKXXWPXXPPXXRXXLXXXPPEXEDKXXXPPCR 498
GA G GP PP G P PP + P D PP
Sbjct: 209 PLTP-GAPGEPGDSGPPGPPGPP--GAPGNDGPPGPPGPKGAPGPDGPPGADGQSGPPGP 265
Query: 497 XRTXLAPGVXAGXPK 453
PG PK
Sbjct: 266 PGPAGTPGEKGICPK 280
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 37.5 bits (83), Expect = 0.014
Identities = 45/193 (23%), Positives = 49/193 (25%), Gaps = 2/193 (1%)
Frame = -1
Query: 941 TGGXXQPXXXXGGXWXQXPKQKXGXXXKGXPXXPPXEGXPGTGXXLXRXXXRTEKGXP-K 765
TGG Q P G P P G PG + P K
Sbjct: 87 TGGGAQSGSCESCCLPGPPGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCK 146
Query: 764 XXPXGXTXPGXXKTXPGRPPRXXTPXXXXXTXERGAXGXXPXXGPXPXGXPPVXGPXKXX 585
P G P PG +P G G P P P G P P
Sbjct: 147 PCPQGPPGPPGPPGPPGDSGEPGSPGLPGQDAAPGEPG--PKGPPGPPGAP--GAPGTPG 202
Query: 584 WPXXPPXXRXXLXXXP-PEXEDKXXXPPCRXRTXLAPGVXAGXPKKXPXXXTXAPNAXXR 408
P P + P P E PP A G K P P A
Sbjct: 203 EPGVPAQSEPLIPGEPGPPGEAGPQGPPGSPGQPGADGSPGQPGPKGPNGPDGQPGADGN 262
Query: 407 IXXPSPTPPPXNP 369
P P PP +P
Sbjct: 263 PGAPGPAGPPGSP 275
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 37.5 bits (83), Expect = 0.014
Identities = 45/193 (23%), Positives = 49/193 (25%), Gaps = 2/193 (1%)
Frame = -1
Query: 941 TGGXXQPXXXXGGXWXQXPKQKXGXXXKGXPXXPPXEGXPGTGXXLXRXXXRTEKGXP-K 765
TGG Q P G P P G PG + P K
Sbjct: 87 TGGGAQSGSCESCCLPGPPGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCK 146
Query: 764 XXPXGXTXPGXXKTXPGRPPRXXTPXXXXXTXERGAXGXXPXXGPXPXGXPPVXGPXKXX 585
P G P PG +P G G P P P G P P
Sbjct: 147 PCPQGPPGPPGPPGPPGDSGEPGSPGLPGQDAAPGEPG--PKGPPGPPGAP--GAPGTPG 202
Query: 584 WPXXPPXXRXXLXXXP-PEXEDKXXXPPCRXRTXLAPGVXAGXPKKXPXXXTXAPNAXXR 408
P P + P P E PP A G K P P A
Sbjct: 203 EPGVPAQSEPLIPGEPGPPGEAGPQGPPGSPGQPGADGSPGQPGPKGPNGPDGQPGADGN 262
Query: 407 IXXPSPTPPPXNP 369
P P PP +P
Sbjct: 263 PGAPGPAGPPGSP 275
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 36.3 bits (80), Expect = 0.032
Identities = 26/89 (29%), Positives = 29/89 (32%), Gaps = 2/89 (2%)
Frame = -1
Query: 851 PXXPPXEGXPGTGXXLXRXXXRTEKGXPKXXPXGXTXPGXXKTXPGRPPRXXTPXXXXXT 672
P P G P TG R ++ P+ P G G T GRP R
Sbjct: 422 PTGRPPRGSPPTGSPPTGLPSRQKRQAPEDRPTGSPPTGSPPT--GRPHRGGPGKSESSE 479
Query: 671 XERGAXGXX--PXXGPXPXGXPPVXGPXK 591
G G P G P G PP P K
Sbjct: 480 SREGPRGPRRSPPTGSPPTGSPPTGAPPK 508
Score = 34.3 bits (75), Expect = 0.13
Identities = 38/181 (20%), Positives = 49/181 (27%), Gaps = 2/181 (1%)
Frame = -1
Query: 887 PKQKXGXXXKGXPXXPPXEGXPGTGXXLXRXXXRT--EKGXPKXXPXGXTXPGXXKTXPG 714
P+QK + P P G P TG ++ E + P G G P
Sbjct: 333 PRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGG-----PR 387
Query: 713 RPPRXXTPXXXXXTXERGAXGXXPXXGPXPXGXPPVXGPXKXXWPXXPPXXRXXLXXXPP 534
PR + E P G P G PP P + P P
Sbjct: 388 GGPRKSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTGLPSRQKRQ 447
Query: 533 EXEDKXXXPPCRXRTXLAPGVXAGXPKKXPXXXTXAPNAXXRIXXPSPTPPPXNPXXXTT 354
ED+ P G K P R P+ +PP +P
Sbjct: 448 APEDRPTGSPPTGSPPTGRPHRGGPGKSESSESREGPRGPRR-SPPTGSPPTGSPPTGAP 506
Query: 353 P 351
P
Sbjct: 507 P 507
Score = 29.9 bits (64), Expect = 2.8
Identities = 28/91 (30%), Positives = 29/91 (31%)
Frame = -2
Query: 613 PPXPALXXXXGXXXPPRXGXXSXXXPQXRKTNXXXPLAGXEPXWPRXXGRGXXKXXPXXX 434
PP PA G PPR G P + P AG P PR G P
Sbjct: 256 PPPPAA----GSPPPPRTGSP----PPPPTGSPPPPPAGGSPPPPRA-GSPPPPPPPRGS 306
Query: 433 PXPQTXXXESXXQAQPPXPXTXXPXPPPXTK 341
P P PP T P PPP K
Sbjct: 307 P-PTGSLPPPQAGGSPPPAGTGSPPPPPRQK 336
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/89 (24%), Positives = 23/89 (25%)
Frame = -1
Query: 857 GXPXXPPXEGXPGTGXXLXRXXXRTEKGXPKXXPXGXTXPGXXKTXPGRPPRXXTPXXXX 678
G P PP G P +G P G G P
Sbjct: 278 GSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKR 337
Query: 677 XTXERGAXGXXPXXGPXPXGXPPVXGPXK 591
ER P G P G PP GP K
Sbjct: 338 QAPERSPPTGSPPTGSPPTGRPPRGGPGK 366
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/53 (30%), Positives = 16/53 (30%)
Frame = -2
Query: 508 PLAGXEPXWPRXXGRGXXKXXPXXXPXPQTXXXESXXQAQPPXPXTXXPXPPP 350
P AG P P G P P PP P T P PPP
Sbjct: 232 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 284
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 36.3 bits (80), Expect = 0.032
Identities = 26/89 (29%), Positives = 29/89 (32%), Gaps = 2/89 (2%)
Frame = -1
Query: 851 PXXPPXEGXPGTGXXLXRXXXRTEKGXPKXXPXGXTXPGXXKTXPGRPPRXXTPXXXXXT 672
P P G P TG R ++ P+ P G G T GRP R
Sbjct: 443 PTGRPPRGSPPTGSPPTGLPSRQKRQAPEDRPTGSPPTGSPPT--GRPHRGGPGKSESSE 500
Query: 671 XERGAXGXX--PXXGPXPXGXPPVXGPXK 591
G G P G P G PP P K
Sbjct: 501 SREGPRGPRRSPPTGSPPTGSPPTGAPPK 529
Score = 34.3 bits (75), Expect = 0.13
Identities = 38/181 (20%), Positives = 49/181 (27%), Gaps = 2/181 (1%)
Frame = -1
Query: 887 PKQKXGXXXKGXPXXPPXEGXPGTGXXLXRXXXRT--EKGXPKXXPXGXTXPGXXKTXPG 714
P+QK + P P G P TG ++ E + P G G P
Sbjct: 354 PRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGG-----PR 408
Query: 713 RPPRXXTPXXXXXTXERGAXGXXPXXGPXPXGXPPVXGPXKXXWPXXPPXXRXXLXXXPP 534
PR + E P G P G PP P + P P
Sbjct: 409 GGPRKSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTGLPSRQKRQ 468
Query: 533 EXEDKXXXPPCRXRTXLAPGVXAGXPKKXPXXXTXAPNAXXRIXXPSPTPPPXNPXXXTT 354
ED+ P G K P R P+ +PP +P
Sbjct: 469 APEDRPTGSPPTGSPPTGRPHRGGPGKSESSESREGPRGPRR-SPPTGSPPTGSPPTGAP 527
Query: 353 P 351
P
Sbjct: 528 P 528
Score = 29.9 bits (64), Expect = 2.8
Identities = 28/91 (30%), Positives = 29/91 (31%)
Frame = -2
Query: 613 PPXPALXXXXGXXXPPRXGXXSXXXPQXRKTNXXXPLAGXEPXWPRXXGRGXXKXXPXXX 434
PP PA G PPR G P + P AG P PR G P
Sbjct: 277 PPPPAA----GSPPPPRTGSP----PPPPTGSPPPPPAGGSPPPPRA-GSPPPPPPPRGS 327
Query: 433 PXPQTXXXESXXQAQPPXPXTXXPXPPPXTK 341
P P PP T P PPP K
Sbjct: 328 P-PTGSLPPPQAGGSPPPAGTGSPPPPPRQK 357
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/89 (24%), Positives = 23/89 (25%)
Frame = -1
Query: 857 GXPXXPPXEGXPGTGXXLXRXXXRTEKGXPKXXPXGXTXPGXXKTXPGRPPRXXTPXXXX 678
G P PP G P +G P G G P
Sbjct: 299 GSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKR 358
Query: 677 XTXERGAXGXXPXXGPXPXGXPPVXGPXK 591
ER P G P G PP GP K
Sbjct: 359 QAPERSPPTGSPPTGSPPTGRPPRGGPGK 387
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/53 (30%), Positives = 16/53 (30%)
Frame = -2
Query: 508 PLAGXEPXWPRXXGRGXXKXXPXXXPXPQTXXXESXXQAQPPXPXTXXPXPPP 350
P AG P P G P P PP P T P PPP
Sbjct: 253 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 305
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 36.3 bits (80), Expect = 0.032
Identities = 26/89 (29%), Positives = 29/89 (32%), Gaps = 2/89 (2%)
Frame = -1
Query: 851 PXXPPXEGXPGTGXXLXRXXXRTEKGXPKXXPXGXTXPGXXKTXPGRPPRXXTPXXXXXT 672
P P G P TG R ++ P+ P G G T GRP R
Sbjct: 428 PTGRPPRGSPPTGSPPTGLPSRQKRQAPEDRPTGSPPTGSPPT--GRPHRGGPGKSESSE 485
Query: 671 XERGAXGXX--PXXGPXPXGXPPVXGPXK 591
G G P G P G PP P K
Sbjct: 486 SREGPRGPRRSPPTGSPPTGSPPTGAPPK 514
Score = 34.3 bits (75), Expect = 0.13
Identities = 38/181 (20%), Positives = 49/181 (27%), Gaps = 2/181 (1%)
Frame = -1
Query: 887 PKQKXGXXXKGXPXXPPXEGXPGTGXXLXRXXXRT--EKGXPKXXPXGXTXPGXXKTXPG 714
P+QK + P P G P TG ++ E + P G G P
Sbjct: 339 PRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGG-----PR 393
Query: 713 RPPRXXTPXXXXXTXERGAXGXXPXXGPXPXGXPPVXGPXKXXWPXXPPXXRXXLXXXPP 534
PR + E P G P G PP P + P P
Sbjct: 394 GGPRKSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTGLPSRQKRQ 453
Query: 533 EXEDKXXXPPCRXRTXLAPGVXAGXPKKXPXXXTXAPNAXXRIXXPSPTPPPXNPXXXTT 354
ED+ P G K P R P+ +PP +P
Sbjct: 454 APEDRPTGSPPTGSPPTGRPHRGGPGKSESSESREGPRGPRR-SPPTGSPPTGSPPTGAP 512
Query: 353 P 351
P
Sbjct: 513 P 513
Score = 29.9 bits (64), Expect = 2.8
Identities = 28/91 (30%), Positives = 29/91 (31%)
Frame = -2
Query: 613 PPXPALXXXXGXXXPPRXGXXSXXXPQXRKTNXXXPLAGXEPXWPRXXGRGXXKXXPXXX 434
PP PA G PPR G P + P AG P PR G P
Sbjct: 262 PPPPAA----GSPPPPRTGSP----PPPPTGSPPPPPAGGSPPPPRA-GSPPPPPPPRGS 312
Query: 433 PXPQTXXXESXXQAQPPXPXTXXPXPPPXTK 341
P P PP T P PPP K
Sbjct: 313 P-PTGSLPPPQAGGSPPPAGTGSPPPPPRQK 342
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/89 (24%), Positives = 23/89 (25%)
Frame = -1
Query: 857 GXPXXPPXEGXPGTGXXLXRXXXRTEKGXPKXXPXGXTXPGXXKTXPGRPPRXXTPXXXX 678
G P PP G P +G P G G P
Sbjct: 284 GSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKR 343
Query: 677 XTXERGAXGXXPXXGPXPXGXPPVXGPXK 591
ER P G P G PP GP K
Sbjct: 344 QAPERSPPTGSPPTGSPPTGRPPRGGPGK 372
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/53 (30%), Positives = 16/53 (30%)
Frame = -2
Query: 508 PLAGXEPXWPRXXGRGXXKXXPXXXPXPQTXXXESXXQAQPPXPXTXXPXPPP 350
P AG P P G P P PP P T P PPP
Sbjct: 238 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 290
>U80838-2|AAL02517.1| 297|Caenorhabditis elegans Abnormal cell
lineage protein 42,isoform a protein.
Length = 297
Score = 33.9 bits (74), Expect = 0.17
Identities = 24/83 (28%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
Frame = -1
Query: 584 WPXXPPXXRXXLXXXPPEXEDKXXXPPCRXRTXLAPGVXAGXPKKX--PXXXTXAPNAXX 411
+P P R L ED+ CR L+ V + P K P T +
Sbjct: 138 YPPQTPLTREALTLHTKRFEDEYKDTWCRRLKRLSDDVPSSPPAKRTTPIHWTSSSQNHY 197
Query: 410 RIXXPSPTPPPXNPXXXT-TPXD 345
R P+P PPP T TP D
Sbjct: 198 RTMAPAPPPPPGKNYQITYTPLD 220
>U80838-1|AAU05570.1| 597|Caenorhabditis elegans Abnormal cell
lineage protein 42,isoform b protein.
Length = 597
Score = 33.9 bits (74), Expect = 0.17
Identities = 24/83 (28%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
Frame = -1
Query: 584 WPXXPPXXRXXLXXXPPEXEDKXXXPPCRXRTXLAPGVXAGXPKKX--PXXXTXAPNAXX 411
+P P R L ED+ CR L+ V + P K P T +
Sbjct: 438 YPPQTPLTREALTLHTKRFEDEYKDTWCRRLKRLSDDVPSSPPAKRTTPIHWTSSSQNHY 497
Query: 410 RIXXPSPTPPPXNPXXXT-TPXD 345
R P+P PPP T TP D
Sbjct: 498 RTMAPAPPPPPGKNYQITYTPLD 520
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 32.3 bits (70), Expect = 0.53
Identities = 44/193 (22%), Positives = 49/193 (25%), Gaps = 2/193 (1%)
Frame = -1
Query: 941 TGGXXQPXXXXGGXWXQXPKQKXGXXXKGXPXXPPXEGXPGTGXXLXRXXXRTEKGXP-K 765
TGG Q P G P P G PG + P K
Sbjct: 87 TGGGAQSGSCESCCLPGPPGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPWK 146
Query: 764 XXPXGXTXPGXXKTXPGRPPRXXTPXXXXXTXERGAXGXXPXXGPXPXGXPPVXGPXKXX 585
P G P PG P P + A G GP G P G +
Sbjct: 147 PCPQGPPGPPGP---PGPPGDSGEPGSPGLPGQDAAPGEPGPKGPK--GPPGAPGAPEHQ 201
Query: 584 WPXXPPXXRXXLXXXP-PEXEDKXXXPPCRXRTXLAPGVXAGXPKKXPXXXTXAPNAXXR 408
P + P P E PP A G K P P A
Sbjct: 202 ESQECPRGEPLIPGEPGPPGEAGPQGPPGSPGQPGADGSPGQPGPKGPNGPDGQPGADGN 261
Query: 407 IXXPSPTPPPXNP 369
P P PP +P
Sbjct: 262 PGAPGPAGPPGSP 274
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 31.9 bits (69), Expect = 0.70
Identities = 35/135 (25%), Positives = 36/135 (26%)
Frame = -1
Query: 857 GXPXXPPXEGXPGTGXXLXRXXXRTEKGXPKXXPXGXTXPGXXKTXPGRPPRXXTPXXXX 678
G P P G PG R G P P G P PG TP
Sbjct: 158 GPPGPPGAPGDPGEAGTPGRPGTDATPGLP--GPRGPPGPPGEAGQPGPQGDAGTPAQSE 215
Query: 677 XTXERGAXGXXPXXGPXPXGXPPVXGPXKXXWPXXPPXXRXXLXXXPPEXEDKXXXPPCR 498
GA G GP PP G P PP + P D PP
Sbjct: 216 PLTP-GAPGEAGDAGPAGPPGPP--GAPGNDGPPGPPGPKGSPGPDGPAGVDGQAGPPGP 272
Query: 497 XRTXLAPGVXAGXPK 453
PG PK
Sbjct: 273 PGQAGTPGEKGICPK 287
Score = 29.1 bits (62), Expect = 4.9
Identities = 25/88 (28%), Positives = 25/88 (28%), Gaps = 1/88 (1%)
Frame = -1
Query: 857 GXPXXPPXEGXPGT-GXXLXRXXXRTEKGXPKXXPXGXTXPGXXKTXPGRPPRXXTPXXX 681
G P P G PG G T K P G P PG P TP
Sbjct: 119 GKPGRPGAPGQPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRP 178
Query: 680 XXTXERGAXGXXPXXGPXPXGXPPVXGP 597
G G P P P G GP
Sbjct: 179 GTDATPGLPG--PRGPPGPPGEAGQPGP 204
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 31.9 bits (69), Expect = 0.70
Identities = 35/135 (25%), Positives = 36/135 (26%)
Frame = -1
Query: 857 GXPXXPPXEGXPGTGXXLXRXXXRTEKGXPKXXPXGXTXPGXXKTXPGRPPRXXTPXXXX 678
G P P G PG R G P P G P PG TP
Sbjct: 158 GPPGPPGAPGDPGEAGTPGRPGTDATPGLP--GPRGPPGPPGEAGQPGPQGDAGTPAQSE 215
Query: 677 XTXERGAXGXXPXXGPXPXGXPPVXGPXKXXWPXXPPXXRXXLXXXPPEXEDKXXXPPCR 498
GA G GP PP G P PP + P D PP
Sbjct: 216 PLTP-GAPGEAGDAGPAGPPGPP--GAPGNDGPPGPPGPKGSPGPDGPAGVDGQAGPPGP 272
Query: 497 XRTXLAPGVXAGXPK 453
PG PK
Sbjct: 273 PGQAGTPGEKGICPK 287
Score = 29.1 bits (62), Expect = 4.9
Identities = 25/88 (28%), Positives = 25/88 (28%), Gaps = 1/88 (1%)
Frame = -1
Query: 857 GXPXXPPXEGXPGT-GXXLXRXXXRTEKGXPKXXPXGXTXPGXXKTXPGRPPRXXTPXXX 681
G P P G PG G T K P G P PG P TP
Sbjct: 119 GKPGRPGAPGQPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRP 178
Query: 680 XXTXERGAXGXXPXXGPXPXGXPPVXGP 597
G G P P P G GP
Sbjct: 179 GTDATPGLPG--PRGPPGPPGEAGQPGP 204
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/57 (29%), Positives = 18/57 (31%)
Frame = -2
Query: 508 PLAGXEPXWPRXXGRGXXKXXPXXXPXPQTXXXESXXQAQPPXPXTXXPXPPPXTKP 338
P+ G P P G P P P S PP P P PPP P
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/57 (29%), Positives = 18/57 (31%)
Frame = -2
Query: 508 PLAGXEPXWPRXXGRGXXKXXPXXXPXPQTXXXESXXQAQPPXPXTXXPXPPPXTKP 338
P+ G P P G P P P S PP P P PPP P
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/57 (29%), Positives = 18/57 (31%)
Frame = -2
Query: 508 PLAGXEPXWPRXXGRGXXKXXPXXXPXPQTXXXESXXQAQPPXPXTXXPXPPPXTKP 338
P+ G P P G P P P S PP P P PPP P
Sbjct: 304 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 360
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/80 (25%), Positives = 25/80 (31%), Gaps = 2/80 (2%)
Frame = -2
Query: 571 PPRXGXXSXXXPQXRKTNXXXPLAGXEPXWPRXXGRGXXKXXPXXXPXPQTXXXESXXQA 392
PP G + P + G P +G P PQ E
Sbjct: 66 PPPKGTGTPPPPPTGEPQDLSAEEGNASRRPPPPPKGTGTPPPPPTGEPQDLSGEGNASR 125
Query: 391 QPPXPX--TXXPXPPPXTKP 338
+PP P T P PPP +P
Sbjct: 126 RPPPPPKGTGSPPPPPTGEP 145
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 29.9 bits (64), Expect = 2.8
Identities = 23/97 (23%), Positives = 26/97 (26%), Gaps = 1/97 (1%)
Frame = -1
Query: 857 GXPXXPPXEGXPGTGXXLXRXXXRTEKGXPKXX-PXGXTXPGXXKTXPGRPPRXXTPXXX 681
G P P +G G + G P P G P PG P + P
Sbjct: 181 GPPGPPGPDGNAGPAGAPGVPGPDGDAGSPPPPGPPGPPGPPGNDGQPGAPGQDGQPGAP 240
Query: 680 XXTXERGAXGXXPXXGPXPXGXPPVXGPXKXXWPXXP 570
G P P P G P G P P
Sbjct: 241 GTNTVNSPGGPGPAGPPGPPGPPGQDGSGGAAQPGPP 277
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 29.1 bits (62), Expect = 4.9
Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 1/88 (1%)
Frame = -1
Query: 860 KGXPXXPPXEGXPGTGXXLXRXXXRTEKGXPKXXPXGXTXPGXXKTXPGRPPRXXTPXXX 681
+G P P +G G + G P P G P G+P + P
Sbjct: 200 QGAPGVPGEKGPTGEPGKVINGAPPGPPGPP--GPPGPQGPPGPPGKDGQPGKAGPPGLP 257
Query: 680 XXTXERGAXG-XXPXXGPXPXGXPPVXG 600
E+G+ G P G P G P G
Sbjct: 258 GDPGEKGSDGLPGPHGGTGPRGPPGQPG 285
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 29.1 bits (62), Expect = 4.9
Identities = 29/128 (22%), Positives = 35/128 (27%), Gaps = 4/128 (3%)
Frame = -1
Query: 938 GGXXQPXXXXGGXWXQXPKQKXGXXXKGXPXXPPXEGXPGTGXXLXRXXXRTEKGXPKXX 759
G QP GG + K P PP G PG R + G P
Sbjct: 158 GAPGQPGSN-GGAGSNGASEGSAGGCKTCPAGPP--GPPGPAGQAGRPGNDGQPGAPSFG 214
Query: 758 ----PXGXTXPGXXKTXPGRPPRXXTPXXXXXTXERGAXGXXPXXGPXPXGXPPVXGPXK 591
G P PG+P P + G+ P P G P G
Sbjct: 215 GGVGAPGAPGPAGDAGSPGQPGAPGQPGRPGKNAQGGSSRPGPPGPAGPPGPPGNNGAPG 274
Query: 590 XXWPXXPP 567
+ PP
Sbjct: 275 GGYGVGPP 282
>AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen protein
141 protein.
Length = 314
Score = 29.1 bits (62), Expect = 4.9
Identities = 23/87 (26%), Positives = 27/87 (31%)
Frame = -1
Query: 857 GXPXXPPXEGXPGTGXXLXRXXXRTEKGXPKXXPXGXTXPGXXKTXPGRPPRXXTPXXXX 678
G P G PG + G P P G T P PG+P +P
Sbjct: 144 GPPGPAGTPGAPGAPGNAGAPGQDSFGGGP--GPAGPTGPTGDAGAPGQPGHPGSPGNPG 201
Query: 677 XTXERGAXGXXPXXGPXPXGXPPVXGP 597
+R P P P G P GP
Sbjct: 202 RGGQRSRGLPGPSGRPGPQG--PAGGP 226
>Z70271-3|CAA94234.1| 358|Caenorhabditis elegans Hypothetical
protein W08D2.6 protein.
Length = 358
Score = 28.7 bits (61), Expect = 6.5
Identities = 24/86 (27%), Positives = 25/86 (29%)
Frame = -1
Query: 857 GXPXXPPXEGXPGTGXXLXRXXXRTEKGXPKXXPXGXTXPGXXKTXPGRPPRXXTPXXXX 678
G P P G G + EKG G P K G P TP
Sbjct: 222 GDPGKPGEMGPNGFQGKVGPDGFPGEKGGDGRRLIGRPGPKGQKGETGHPGAQGTPGHNG 281
Query: 677 XTXERGAXGXXPXXGPXPXGXPPVXG 600
T G G P GP P G G
Sbjct: 282 PTGPPGDAG--PDGGPGPQGEQGADG 305
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.7 bits (61), Expect = 6.5
Identities = 21/75 (28%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
Frame = -2
Query: 490 PXWPRXXGRGXXKXXPXXXPX-PQTXXXESXXQAQPPXPXTXXPXPPPXTKPS*YXRXXX 314
P PR G P P P+T S +PP PP T PS R
Sbjct: 125 PPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPP 184
Query: 313 RTXVTXPXRPXXKXN 269
RT + P + N
Sbjct: 185 RTPPSPIPPPPPRLN 199
>Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical
protein F33E2.6 protein.
Length = 846
Score = 28.3 bits (60), Expect = 8.6
Identities = 22/85 (25%), Positives = 24/85 (28%)
Frame = -1
Query: 626 PXGXPPVXGPXKXXWPXXPPXXRXXLXXXPPEXEDKXXXPPCRXRTXLAPGVXAGXPKKX 447
P PP P K P P PP+ E PP P P
Sbjct: 368 PKTDPPRTEPPKTEPPTTEPPKIEPPRTEPPKTEPPPTEPPKTEPPKTTP-PKTEPPTTE 426
Query: 446 PXXXTXAPNAXXRIXXPSPTPPPXN 372
P R+ PSP PP N
Sbjct: 427 PPNIPYCWQQQSRLFAPSPPPPRVN 451
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 28.3 bits (60), Expect = 8.6
Identities = 22/95 (23%), Positives = 28/95 (29%)
Frame = -1
Query: 884 KQKXGXXXKGXPXXPPXEGXPGTGXXLXRXXXRTEKGXPKXXPXGXTXPGXXKTXPGRPP 705
KQ+ +G P G PG + G P G P PG+
Sbjct: 130 KQECIKCPQGLPGPAGVPGQPGPKGPNGNPGAPAQGGGQ--GPPGPPGPAGSAGSPGQAG 187
Query: 704 RXXTPXXXXXTXERGAXGXXPXXGPXPXGXPPVXG 600
P + +RG P P P G P G
Sbjct: 188 APGNPGSPGKSGQRGRGLPGPSGAPGPQGPPGAPG 222
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.3 bits (60), Expect = 8.6
Identities = 33/124 (26%), Positives = 35/124 (28%)
Frame = -1
Query: 740 PGXXKTXPGRPPRXXTPXXXXXTXERGAXGXXPXXGPXPXGXPPVXGPXKXXWPXXPPXX 561
P P PP TP + G P P P G P P P PP
Sbjct: 265 PPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTP-GPPGMPGMPPPPPPS 323
Query: 560 RXXLXXXPPEXEDKXXXPPCRXRTXLAPGVXAGXPKKXPXXXTXAPNAXXRIXXPSPTPP 381
R PP PP R PG G P P A P P+ P
Sbjct: 324 R----FGPPGMGGMPPPPPPGMR---YPG---GMPPPPPPRYPSA--GPGMYPPPPPSRP 371
Query: 380 PXNP 369
P P
Sbjct: 372 PAPP 375
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = -2
Query: 424 QTXXXESXXQAQPPXPXTXXPXPPPXTKPS*YXRXXXRTXVTXPXRP 284
QT ES A P P P PPP KP+ Y + T P P
Sbjct: 11 QTTYPESAPAATTPQP----PPPPPPPKPAPYVEQSAQPQQTAPPPP 53
>U40059-1|AAA81138.3| 867|Caenorhabditis elegans Hypothetical
protein K03C7.1 protein.
Length = 867
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/53 (28%), Positives = 21/53 (39%)
Frame = -2
Query: 508 PLAGXEPXWPRXXGRGXXKXXPXXXPXPQTXXXESXXQAQPPXPXTXXPXPPP 350
PL G +P P+ + K P P + E+ A+PP P PP
Sbjct: 220 PLGGPKPKDPKLAKKAPAKK-PTDKPKSKDVPKEAPKPAEPPKPAAPKKWKPP 271
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.3 bits (60), Expect = 8.6
Identities = 33/124 (26%), Positives = 35/124 (28%)
Frame = -1
Query: 740 PGXXKTXPGRPPRXXTPXXXXXTXERGAXGXXPXXGPXPXGXPPVXGPXKXXWPXXPPXX 561
P P PP TP + G P P P G P P P PP
Sbjct: 275 PPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTP-GPPGMPGMPPPPPPS 333
Query: 560 RXXLXXXPPEXEDKXXXPPCRXRTXLAPGVXAGXPKKXPXXXTXAPNAXXRIXXPSPTPP 381
R PP PP R PG G P P A P P+ P
Sbjct: 334 R----FGPPGMGGMPPPPPPGMR---YPG---GMPPPPPPRYPSA--GPGMYPPPPPSRP 381
Query: 380 PXNP 369
P P
Sbjct: 382 PAPP 385
>AY714779-1|AAU14146.1| 1338|Caenorhabditis elegans UNC-89 protein.
Length = 1338
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = -1
Query: 446 PXXXTXAPNAXXRIXXPSPTPPPXNPXXXTTPXDQTXVI 330
P T P R P PTP P +P P Q +I
Sbjct: 531 PSTPTLTPEVTIRETIPKPTPSPTSPQKSPVPQPQGLLI 569
>AF003131-8|AAP68959.1| 1393|Caenorhabditis elegans Uncoordinated
protein 89, isoform c protein.
Length = 1393
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = -1
Query: 446 PXXXTXAPNAXXRIXXPSPTPPPXNPXXXTTPXDQTXVI 330
P T P R P PTP P +P P Q +I
Sbjct: 495 PSTPTLTPEVTIRETIPKPTPSPTSPQKSPVPQPQGLLI 533
>AF003131-7|AAV34798.1| 1396|Caenorhabditis elegans Uncoordinated
protein 89, isoform d protein.
Length = 1396
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = -1
Query: 446 PXXXTXAPNAXXRIXXPSPTPPPXNPXXXTTPXDQTXVI 330
P T P R P PTP P +P P Q +I
Sbjct: 498 PSTPTLTPEVTIRETIPKPTPSPTSPQKSPVPQPQGLLI 536
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = -1
Query: 446 PXXXTXAPNAXXRIXXPSPTPPPXNPXXXTTPXDQTXVI 330
P T P R P PTP P +P P Q +I
Sbjct: 6543 PSTPTLTPEVTIRETIPKPTPSPTSPQKSPVPQPQGLLI 6581
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = -1
Query: 446 PXXXTXAPNAXXRIXXPSPTPPPXNPXXXTTPXDQTXVI 330
P T P R P PTP P +P P Q +I
Sbjct: 7183 PSTPTLTPEVTIRETIPKPTPSPTSPQKSPVPQPQGLLI 7221
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,555,140
Number of Sequences: 27780
Number of extensions: 218573
Number of successful extensions: 844
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2486134266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -