Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_K05
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    48   2e-06
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    44   3e-05
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    33   0.043
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    29   1.2  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    26   8.6  
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce...    26   8.6  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   8.6  

>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 22/80 (27%), Positives = 41/80 (51%)
 Frame = +1

Query: 532 CGHYFCNDCWAMHFEVQIMQGVSNTIRCMAXNCEVRAPEDFVLSHVTKPALRDRYQQFMF 711
           C H FC  C+  + + +I +G S  I+C   +C        +   + + +L DRY + + 
Sbjct: 147 CDHEFCLACYRQYLDSRISEGES-VIQCPEESCTQIVSIQSITKVLDEKSL-DRYHRLLD 204

Query: 712 KDHVKSHPQLRFCPGPNCQW 771
           +  V  +  LR+CP P+C++
Sbjct: 205 RSFVDDNDHLRWCPAPDCEF 224


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
 Frame = +1

Query: 532 CGHYFCNDCWAMHFEVQIMQGVSNTIRCMAXNCEVRAPEDFV--LSHVTKPALRDRYQQF 705
           CGH  C  C   ++ + I +G+ + I+C+  +C   AP   +  L  +    L +RY++ 
Sbjct: 192 CGHVSCQSCLRDYYTMCIQEGMFSQIKCIDLDCGKDAPVLTLKELESIVGVQLTNRYKEL 251

Query: 706 MFKDHVKSHPQLRFCPGPNCQ 768
             K   ++   + FCP   CQ
Sbjct: 252 EEKRRYENDSNIIFCPRSFCQ 272


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 33.5 bits (73), Expect = 0.043
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = -2

Query: 634 PHSXEPCSVLYLRLLALFELQNAL--PNSRCKNNVHMLVHYTCAVEVCWHKQHNLICLIY 461
           PHS   CS ++ + L+L +L + L  PN   +N V  +V    + + C      ++C+I+
Sbjct: 564 PHS---CSTMFPQTLSLMQLLDCLLNPNMTLQNLVEEMVRLGISRKRCERYPFGILCIIF 620

Query: 460 FVKALVASPY 431
            V  + A  Y
Sbjct: 621 TVLEIAAEEY 630


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +1

Query: 568 HFEVQIMQG-VSNTIRCMAXNCEVRAPEDFVLSHVTKPALRDRYQQFMFKDHVKSHPQLR 744
           H E+Q+M     N I     +C V+     V+       L  + +Q ++ D +K   +++
Sbjct: 242 HIEIQLMADKAGNVIHLHERDCSVQRRHQKVVEIAPAKDLDPKIRQALYDDAIKIAKEVK 301

Query: 745 FCPGPNCQWI 774
           +C     +++
Sbjct: 302 YCNAGTAEFL 311


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 643  PEDFVLSHVTKPALRDRYQQFMFKDHVKSHPQLRF 747
            P D V   VT  A     +Q +   HV SHP+LRF
Sbjct: 1249 PADHVARVVTASAFHP--EQGVIVAHVTSHPRLRF 1281


>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +1

Query: 559 WAMHFEVQIMQGVSNTIRCMAXNCEVRAPEDFVLSHVTKPALR 687
           W  H  +Q+   +++T+ C A +  V     FV++++   +LR
Sbjct: 376 WITHHYIQLGYQLADTVSCAAYSFAVSCALLFVMNYIPGLSLR 418


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/58 (25%), Positives = 23/58 (39%)
 Frame = +1

Query: 532 CGHYFCNDCWAMHFEVQIMQGVSNTIRCMAXNCEVRAPEDFVLSHVTKPALRDRYQQF 705
           CGH FC  C        +MQ ++ + +C    C    P   VL H    ++    + F
Sbjct: 184 CGHTFCGPC--------LMQALTQSPQC--PTCRFGLPSPVVLEHAKSHSITTFLRDF 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,063,297
Number of Sequences: 5004
Number of extensions: 53459
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)