Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_K03
(936 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 32 0.68
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.2
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.6
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.6
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 29 3.6
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 29 4.8
U55373-4|ABR92605.1| 210|Caenorhabditis elegans Collagen protei... 29 4.8
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 6.3
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 6.3
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 6.3
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 29 6.3
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 31.9 bits (69), Expect = 0.68
Identities = 22/74 (29%), Positives = 22/74 (29%)
Frame = -2
Query: 527 GXGXPXXXGPXPPAAGXXXXXKGCRPPXPRGXXXXEPGRGPXTXSASPRGXXDXXXPXPX 348
G G P GP PP G P G PG GP P G P P
Sbjct: 402 GPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPG-GPGAYGPPPTGFPPVGAPPPG 460
Query: 347 PXXPPXPGXXFVXG 306
P G F G
Sbjct: 461 AAGAPG-GNPFARG 473
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.1 bits (67), Expect = 1.2
Identities = 27/93 (29%), Positives = 28/93 (30%)
Frame = -1
Query: 516 PPXXGXPXPXRGXXXXX*RMPPXXPPGGXXXGTG*RAXHPXXLXPGGGGXTXPXTXSXXS 337
PP G P P G PP PPGG TG P PGG P +
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITG---GPPPPPPPGG---LPPISGGPPP 760
Query: 336 PXSWXXICXGXXXXVXFFXLXGXXXPPPXGGXF 238
P C G PPP G F
Sbjct: 761 PPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMF 793
Score = 28.3 bits (60), Expect = 8.3
Identities = 21/69 (30%), Positives = 21/69 (30%)
Frame = -2
Query: 530 GGXGXPXXXGPXPPAAGXXXXXKGCRPPXPRGXXXXEPGRGPXTXSASPRGXXDXXXPXP 351
G P G PP G G PP P G G GP P G P
Sbjct: 702 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITG-GP--PPPPPPGGLPPISGGP 758
Query: 350 XPXXPPXPG 324
P PP G
Sbjct: 759 PPPPPPPGG 767
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.1 bits (67), Expect = 1.2
Identities = 27/93 (29%), Positives = 28/93 (30%)
Frame = -1
Query: 516 PPXXGXPXPXRGXXXXX*RMPPXXPPGGXXXGTG*RAXHPXXLXPGGGGXTXPXTXSXXS 337
PP G P P G PP PPGG TG P PGG P +
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITG---GPPPPPPPGG---LPPISGGPPP 760
Query: 336 PXSWXXICXGXXXXVXFFXLXGXXXPPPXGGXF 238
P C G PPP G F
Sbjct: 761 PPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMF 793
Score = 28.3 bits (60), Expect = 8.3
Identities = 21/69 (30%), Positives = 21/69 (30%)
Frame = -2
Query: 530 GGXGXPXXXGPXPPAAGXXXXXKGCRPPXPRGXXXXEPGRGPXTXSASPRGXXDXXXPXP 351
G P G PP G G PP P G G GP P G P
Sbjct: 702 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITG-GP--PPPPPPGGLPPISGGP 758
Query: 350 XPXXPPXPG 324
P PP G
Sbjct: 759 PPPPPPPGG 767
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.1 bits (67), Expect = 1.2
Identities = 27/93 (29%), Positives = 28/93 (30%)
Frame = -1
Query: 516 PPXXGXPXPXRGXXXXX*RMPPXXPPGGXXXGTG*RAXHPXXLXPGGGGXTXPXTXSXXS 337
PP G P P G PP PPGG TG P PGG P +
Sbjct: 290 PPITGGPPPPPGLPPITGGPPPPPPPGGLPPITG---GPPPPPPPGG---LPPISGGPPP 343
Query: 336 PXSWXXICXGXXXXVXFFXLXGXXXPPPXGGXF 238
P C G PPP G F
Sbjct: 344 PPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMF 376
Score = 28.3 bits (60), Expect = 8.3
Identities = 21/69 (30%), Positives = 21/69 (30%)
Frame = -2
Query: 530 GGXGXPXXXGPXPPAAGXXXXXKGCRPPXPRGXXXXEPGRGPXTXSASPRGXXDXXXPXP 351
G P G PP G G PP P G G GP P G P
Sbjct: 285 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITG-GP--PPPPPPGGLPPISGGP 341
Query: 350 XPXXPPXPG 324
P PP G
Sbjct: 342 PPPPPPPGG 350
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/68 (29%), Positives = 21/68 (30%)
Frame = -2
Query: 530 GGXGXPXXXGPXPPAAGXXXXXKGCRPPXPRGXXXXEPGRGPXTXSASPRGXXDXXXPXP 351
G G P P PP+ G PP P G PG P P P
Sbjct: 309 GPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRY--PGGMPPPPPPRYPSAGPGMYPPP 366
Query: 350 XPXXPPXP 327
P PP P
Sbjct: 367 PPSRPPAP 374
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/68 (29%), Positives = 21/68 (30%)
Frame = -2
Query: 530 GGXGXPXXXGPXPPAAGXXXXXKGCRPPXPRGXXXXEPGRGPXTXSASPRGXXDXXXPXP 351
G G P P PP+ G PP P G PG P P P
Sbjct: 319 GPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRY--PGGMPPPPPPRYPSAGPGMYPPP 376
Query: 350 XPXXPPXP 327
P PP P
Sbjct: 377 PPSRPPAP 384
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/45 (33%), Positives = 16/45 (35%)
Frame = -2
Query: 461 GCRPPXPRGXXXXEPGRGPXTXSASPRGXXDXXXPXPXPXXPPXP 327
G PP P +P GP SP G D P P P P
Sbjct: 924 GFIPPIPVPNPIPKPNPGPGPGPPSPNGPSDPNKPSPNGPSPNGP 968
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 29.1 bits (62), Expect = 4.8
Identities = 21/78 (26%), Positives = 22/78 (28%), Gaps = 2/78 (2%)
Frame = +1
Query: 304 PPXTNXXPGXGGXXGXGXGXXXSXXP--RGEAXXVXGPLPGSXXXXPRGXGGRHPLXXXX 477
PP PG G G P GE + LPG P G G
Sbjct: 100 PPGPPGTPGEQGPQGESGPDGDDGKPGLAGEVVAIVHDLPGGCIQCPPGRPGPRGPPGEV 159
Query: 478 XPAAGGXGPXXXGXPXPP 531
PA G P PP
Sbjct: 160 GPAGPSGDNGRKGPPGPP 177
>U55373-4|ABR92605.1| 210|Caenorhabditis elegans Collagen protein
140, isoform b protein.
Length = 210
Score = 29.1 bits (62), Expect = 4.8
Identities = 21/78 (26%), Positives = 22/78 (28%), Gaps = 2/78 (2%)
Frame = +1
Query: 304 PPXTNXXPGXGGXXGXGXGXXXSXXP--RGEAXXVXGPLPGSXXXXPRGXGGRHPLXXXX 477
PP PG G G P GE + LPG P G G
Sbjct: 100 PPGPPGTPGEQGPQGESGPDGDDGKPGLAGEVVAIVHDLPGGCIQCPPGRPGPRGPPGEV 159
Query: 478 XPAAGGXGPXXXGXPXPP 531
PA G P PP
Sbjct: 160 GPAGPSGDNGRKGPPGPP 177
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Frame = -2
Query: 500 PXPPAAGXXXXXK-GCRPPXPRGXXXXEPGRG--PXTXSASPRGXXDXXXPXPXPXXPP 333
P PPAAG + G PP P G P G P + SP P PP
Sbjct: 256 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 314
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/65 (29%), Positives = 19/65 (29%), Gaps = 2/65 (3%)
Frame = -2
Query: 515 PXXXGPXPPAAGXXXXXK-GCRPPXPRGXXXXEPGRGPXTXSASPRG-XXDXXXPXPXPX 342
P P PP G G PP P G P G PRG P P
Sbjct: 259 PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAG 318
Query: 341 XPPXP 327
P P
Sbjct: 319 GSPPP 323
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Frame = -2
Query: 500 PXPPAAGXXXXXK-GCRPPXPRGXXXXEPGRG--PXTXSASPRGXXDXXXPXPXPXXPP 333
P PPAAG + G PP P G P G P + SP P PP
Sbjct: 277 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 335
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/65 (29%), Positives = 19/65 (29%), Gaps = 2/65 (3%)
Frame = -2
Query: 515 PXXXGPXPPAAGXXXXXK-GCRPPXPRGXXXXEPGRGPXTXSASPRG-XXDXXXPXPXPX 342
P P PP G G PP P G P G PRG P P
Sbjct: 280 PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAG 339
Query: 341 XPPXP 327
P P
Sbjct: 340 GSPPP 344
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Frame = -2
Query: 500 PXPPAAGXXXXXK-GCRPPXPRGXXXXEPGRG--PXTXSASPRGXXDXXXPXPXPXXPP 333
P PPAAG + G PP P G P G P + SP P PP
Sbjct: 262 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 320
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/65 (29%), Positives = 19/65 (29%), Gaps = 2/65 (3%)
Frame = -2
Query: 515 PXXXGPXPPAAGXXXXXK-GCRPPXPRGXXXXEPGRGPXTXSASPRG-XXDXXXPXPXPX 342
P P PP G G PP P G P G PRG P P
Sbjct: 265 PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAG 324
Query: 341 XPPXP 327
P P
Sbjct: 325 GSPPP 329
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +1
Query: 766 TXXVPNXPSXGRXEXPSGRPSXNHXGGXKQXTPPXPP 876
T P P P G P + GG Q PP PP
Sbjct: 244 TVNSPGGPGPAGPPGPPGPPGQDGSGGAAQPGPPGPP 280
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.311 0.140 0.454
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,313,082
Number of Sequences: 27780
Number of extensions: 210974
Number of successful extensions: 361
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
- SilkBase 1999-2023 -