Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_K01
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.11 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.77 
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    26   7.2  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   7.2  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = -2

Query: 762 PPPPPPXGXFFXXKXXQXPPPPRGGXXKK 676
           PPPPPP   F      Q PPPP  G  KK
Sbjct: 9   PPPPPPPPGF--EPPSQPPPPPPPGYVKK 35



 Score = 31.1 bits (67), Expect = 0.19
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -2

Query: 762 PPPPPPXGXFFXXKXXQXPPPPRGGXXKK 676
           PPPPPP G  F       PPPP G   K+
Sbjct: 10  PPPPPPPG--FEPPSQPPPPPPPGYVKKR 36


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -2

Query: 762 PPPPPPXGXFFXXKXXQXPPPP 697
           PPPPPP G          PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 762 PPPPPPXGXFFXXKXXQXPPPP 697
           PPPPPP            PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782


>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 474 PPPKKXXGPXXPREKIFFSXXXPP 545
           P PKK   P  PR+K+  S   PP
Sbjct: 154 PVPKKPSKPSKPRKKVPVSHPLPP 177


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -2

Query: 762 PPPPPPXGXFFXXKXXQXPPPPRGG 688
           PPPPP             PPPP+ G
Sbjct: 908 PPPPPTASMTASAPAIASPPPPKVG 932


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,124,814
Number of Sequences: 5004
Number of extensions: 30873
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)