Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_J23
         (969 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical ...    29   5.0  

>AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical
           protein H32C10.3 protein.
          Length = 783

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -3

Query: 364 YRCRHSRTDNSHNKTRCQYSRE--IHEINWLHFFILSSNFVMFVH*CLT*F 218
           + C   +T +SH+ ++C    +   H   W+H  +   N   FV  CLT F
Sbjct: 544 FTCWIPKTSSSHHCSQCDKCVDGFDHHCPWIHKCVYRKNLRAFVFFCLTIF 594


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,328,992
Number of Sequences: 27780
Number of extensions: 160910
Number of successful extensions: 404
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2510937120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)