Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_J22
(952 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 28 0.16
03_03_0038 + 13984525-13984917,13985351-13985429,13985535-139856... 30 2.4
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996... 25 2.8
09_04_0295 - 16454862-16455035,16455122-16455264,16455393-164559... 30 3.1
03_05_0732 - 27232299-27232535,27232717-27232746,27233094-272331... 24 3.8
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477... 29 4.1
04_04_0500 - 25677767-25680850 25 4.6
07_01_0080 + 587674-588510 25 8.6
08_02_1204 - 25267546-25268219,25268319-25268452,25269567-252696... 28 9.5
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 24 10.0
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 27.9 bits (59), Expect(2) = 0.16
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 735 KKKKKXXXXXPPPPPP 688
KKKK+ PPPPPP
Sbjct: 101 KKKKRHHHHHPPPPPP 116
Score = 27.1 bits (57), Expect(2) = 2.8
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1
Query: 538 PPPPPPPXXFXFFXXP 585
PPPPPPP ++ P
Sbjct: 111 PPPPPPPHLLHYYGHP 126
Score = 25.0 bits (52), Expect(2) = 0.16
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2
Query: 705 PPPPPPXKXXGDFF 664
PPPPPP GD +
Sbjct: 128 PPPPPPPPFKGDHY 141
Score = 21.4 bits (43), Expect(2) = 2.8
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +1
Query: 520 KKKXXXPPPPPPP 558
K+ PPPPPP
Sbjct: 104 KRHHHHHPPPPPP 116
>03_03_0038 +
13984525-13984917,13985351-13985429,13985535-13985628,
13985712-13985844
Length = 232
Score = 30.3 bits (65), Expect = 2.4
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 748 GGGXKKKK-KKXXXXPPPPPPXKXKXG 671
GGG +KK ++ PPPPPP + + G
Sbjct: 23 GGGRRKKAGRRGEAKPPPPPPPQLRGG 49
>10_06_0039 -
9966744-9967535,9968241-9968482,9969021-9969223,
9969333-9970645
Length = 849
Score = 25.4 bits (53), Expect(2) = 2.8
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +1
Query: 538 PPPPPPPXXF 567
PPPPPPP F
Sbjct: 332 PPPPPPPSRF 341
Score = 23.0 bits (47), Expect(2) = 2.8
Identities = 11/44 (25%), Positives = 13/44 (29%)
Frame = +1
Query: 427 PPGAPPXXXXKKXXXXXXXXXXXXXXXXXXXKKKXXXPPPPPPP 558
PP APP ++ PPP PPP
Sbjct: 290 PPPAPPAPRSRRTPPRTRFSAGSGAEMNKQMASPPSNPPPAPPP 333
>09_04_0295 -
16454862-16455035,16455122-16455264,16455393-16455939,
16456006-16456332
Length = 396
Score = 29.9 bits (64), Expect = 3.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 748 GGGXKKKKKKXXXXPPPPPP 689
GGG +++++ PPPPPP
Sbjct: 207 GGGRSRERRRQPSSPPPPPP 226
>03_05_0732 -
27232299-27232535,27232717-27232746,27233094-27233155,
27233975-27234005,27234618-27234713,27234881-27234969,
27235687-27236263
Length = 373
Score = 24.2 bits (50), Expect(2) = 3.8
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +1
Query: 673 PXXFXGGGGGGXXXXXFFFFFXXPPP 750
P GGGGGG FF P P
Sbjct: 116 PVRSGGGGGGGTGPPMLSPFFRLPAP 141
Score = 23.8 bits (49), Expect(2) = 3.8
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 538 PPPPPPP 558
PPPPPPP
Sbjct: 81 PPPPPPP 87
>10_08_0324 +
16747117-16747330,16747432-16747559,16747675-16747744,
16747832-16747988,16748089-16748701,16749132-16749653,
16749686-16750279,16750359-16750709,16750808-16751395
Length = 1078
Score = 29.5 bits (63), Expect = 4.1
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = -2
Query: 294 FXGGEKTPXXKXLKGGGXXKXGGF--PXRVFLGXKXXREXXKKXGXCLTXFSG 142
F GG++ K KGGG + GG P R LG R K G +G
Sbjct: 623 FGGGKRGKSHKNKKGGGGGEGGGLDEPRRGLLGFYKKRSKKDKLGGGAASLAG 675
>04_04_0500 - 25677767-25680850
Length = 1027
Score = 25.0 bits (52), Expect(2) = 4.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +1
Query: 520 KKKXXXPPPPPPP 558
K + PPPPPPP
Sbjct: 12 KPRANQPPPPPPP 24
Score = 22.6 bits (46), Expect(2) = 4.6
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 541 PPPPPPXXF 567
PPPPPP F
Sbjct: 18 PPPPPPPPF 26
>07_01_0080 + 587674-588510
Length = 278
Score = 25.4 bits (53), Expect(2) = 8.6
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +1
Query: 538 PPPPPPPXXF 567
PPPPPPP F
Sbjct: 114 PPPPPPPPLF 123
Score = 21.4 bits (43), Expect(2) = 8.6
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +1
Query: 523 KKXXXPPPPPP 555
++ PPPPPP
Sbjct: 89 RRPPPPPPPPP 99
>08_02_1204 -
25267546-25268219,25268319-25268452,25269567-25269661,
25270289-25270304,25270635-25270684,25270960-25271331
Length = 446
Score = 28.3 bits (60), Expect = 9.5
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 747 GGGXKKKKKXXXXXPPPPPP 688
GGG K K PPPPPP
Sbjct: 81 GGGKNKGKGVAAAAPPPPPP 100
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 23.8 bits (49), Expect(2) = 10.0
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 538 PPPPPPP 558
PPPPPPP
Sbjct: 349 PPPPPPP 355
Score = 22.6 bits (46), Expect(2) = 10.0
Identities = 12/45 (26%), Positives = 12/45 (26%)
Frame = +1
Query: 421 GPPPGAPPXXXXKKXXXXXXXXXXXXXXXXXXXKKKXXXPPPPPP 555
GPPP APP PPPPP
Sbjct: 281 GPPPPAPPPLPPSHHHHHGHHPPPPHPLPPGAGAGAGTGAPPPPP 325
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,598,224
Number of Sequences: 37544
Number of extensions: 432033
Number of successful extensions: 9918
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5923
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2741249160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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