Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_J22
         (952 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc...    27   4.0  
AC006638-1|AAK85482.1|  495|Caenorhabditis elegans Cyclase assoc...    27   4.3  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    24   9.6  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    24   9.7  

>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase associated
            protein homologprotein 1, isoform a protein.
          Length = 1256

 Score = 26.6 bits (56), Expect(2) = 4.0
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 538  PPPPPPPXXFXFF 576
            PPPPPPP    FF
Sbjct: 1012 PPPPPPPPPADFF 1024



 Score = 21.0 bits (42), Expect(2) = 4.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 412  GXXGPPPGAPP 444
            G  GPPP  PP
Sbjct: 1008 GPGGPPPPPPP 1018


>AC006638-1|AAK85482.1|  495|Caenorhabditis elegans Cyclase
           associated protein homologprotein 1, isoform b protein.
          Length = 495

 Score = 26.6 bits (56), Expect(2) = 4.3
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 538 PPPPPPPXXFXFF 576
           PPPPPPP    FF
Sbjct: 251 PPPPPPPPPADFF 263



 Score = 21.0 bits (42), Expect(2) = 4.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 412 GXXGPPPGAPP 444
           G  GPPP  PP
Sbjct: 247 GPGGPPPPPPP 257


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 23.8 bits (49), Expect(2) = 9.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 538 PPPPPPP 558
           PPPPPPP
Sbjct: 307 PPPPPPP 313



 Score = 22.6 bits (46), Expect(2) = 9.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 541 PPPPPPXXF 567
           PPPPPP  F
Sbjct: 327 PPPPPPSRF 335


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 23.8 bits (49), Expect(2) = 9.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 538 PPPPPPP 558
           PPPPPPP
Sbjct: 297 PPPPPPP 303



 Score = 22.6 bits (46), Expect(2) = 9.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 541 PPPPPPXXF 567
           PPPPPP  F
Sbjct: 317 PPPPPPSRF 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,367,311
Number of Sequences: 27780
Number of extensions: 232450
Number of successful extensions: 3148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1820
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2465154230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)