Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_J21
         (934 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   1.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   5.2  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   9.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   9.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   9.2  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 102 HFGYLRTSSRIWLQESPPQNLKEFPIVR 19
           H G +  S R+ +  S P NL+ FP+ R
Sbjct: 122 HSGSITRSIRLTITASCPMNLQYFPMDR 149


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 102 HFGYLRTSSRIWLQESPPQNLKEFPIVR 19
           H G +  S R+ +  S P NL+ FP+ R
Sbjct: 122 HSGSITRSIRLTITASCPMNLQYFPMDR 149


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 102 HFGYLRTSSRIWLQESPPQNLKEFPIVR 19
           H G +  S R+ +  S P NL+ FP+ R
Sbjct: 61  HSGSITRSIRLTITASCPMNLQYFPMDR 88


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 111 QLVHFGYLRTSSRIWLQESPPQNLKEFPI 25
           +L   G +  SSR+ ++   P NL+ FP+
Sbjct: 111 RLYQDGRVLYSSRLTIKAGCPMNLENFPM 139


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 244 LFPSIPQLFSSHSQPAYLG 188
           + P  P+L+  H  P +LG
Sbjct: 9   ILPLNPKLYDKHRAPKFLG 27


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 376 LDTKKLLLRLSVLPRASDFYKIR 308
           LDTKK   ++S L   +D Y ++
Sbjct: 379 LDTKKWNNKISALRALNDLYNVK 401


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 165 SFDECMHIGEADSQQDNQQLVHFGY 91
           S D  + +   D+Q+DN Q++ + Y
Sbjct: 298 SKDSLVFVDNHDTQRDNPQILTYKY 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,639
Number of Sequences: 438
Number of extensions: 4029
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30476628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)