Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_J20
         (922 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0013 + 7350329-7350817                                           30   2.3  
06_02_0002 + 10438098-10438586                                         30   3.0  
07_01_1131 - 10510404-10511000                                         29   5.2  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.9  
11_04_0152 + 14153539-14154060                                         28   9.1  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   9.1  

>11_02_0013 + 7350329-7350817
          Length = 162

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 30/107 (28%), Positives = 37/107 (34%), Gaps = 1/107 (0%)
 Frame = -1

Query: 727 WRXRHASXRGKG-GQVSGKRQGRNRRAHEGASRGKRLVSL*SCRXFATSDLSVDFCDARQ 551
           W  R    RG+G GQ      GR RR  +   RG+R  +    R             +R+
Sbjct: 67  WEGRSVGARGQGSGQRRRIATGRERRRRKRRGRGRRKAAAGGGRR-----------SSRR 115

Query: 550 GGGAYGKTPATRPFYGSWPFAGLLLTCSFLRYPLILWITVLPPLSEL 410
              A G       FY  W      L C   R P  +W     PLS L
Sbjct: 116 APTAVGSPTKKTLFYCPWAEPHSELQCPAHRNPHFIWPNPTLPLSFL 162


>06_02_0002 + 10438098-10438586
          Length = 162

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 30/107 (28%), Positives = 37/107 (34%), Gaps = 1/107 (0%)
 Frame = -1

Query: 727 WRXRHASXRGKG-GQVSGKRQGRNRRAHEGASRGKRLVSL*SCRXFATSDLSVDFCDARQ 551
           W  R    RG+G GQ      GR RR  +   RG+R  +    R             +R+
Sbjct: 67  WEGRSVGARGQGSGQQRRIATGRERRRRKRRGRGRRKAAAGGGRR-----------SSRR 115

Query: 550 GGGAYGKTPATRPFYGSWPFAGLLLTCSFLRYPLILWITVLPPLSEL 410
              A G       FY  W      L C   R P  +W     PLS L
Sbjct: 116 APTAVGSPIKKTLFYCPWAEPHSELQCPAHRNPHFIWPNPTLPLSLL 162


>07_01_1131 - 10510404-10511000
          Length = 198

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -1

Query: 748 RXLQXEXWRXRHASXRG-KGGQVSGKRQ-GRNRRAHEGASRG 629
           R  + E WR RH   RG   G V GKR+ GR R     A  G
Sbjct: 112 RRPEAEQWRQRHCCRRGCTSGGVRGKRRAGRGRGGDYDAGGG 153


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +2

Query: 353 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 508
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>11_04_0152 + 14153539-14154060
          Length = 173

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = -1

Query: 748 RXLQXEXWRXRHASXRG--KGGQVSGKRQGRNRRAHEGASRGKRLVS 614
           R  + E WR RH   RG   GG    +R GR R     A  G  + S
Sbjct: 83  RRPEAEQWRQRHCCRRGCTSGGLHGKRRAGRGRGGDCDAGGGDGMAS 129


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 302 NESAN---ARGEAVCVLGALPLPRSLTRCAR 385
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,214,306
Number of Sequences: 37544
Number of extensions: 415702
Number of successful extensions: 1199
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)