Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_J20
         (922 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC001159-1|AAH01159.1|  341|Homo sapiens paired box gene 9 protein.    27   6.0  
AJ238381-1|CAB41533.1|  341|Homo sapiens pax9 protein protein.         27   6.0  
AB248958-1|BAE79273.1|  341|Homo sapiens paired box protein 9 pr...    27   6.0  
X92850-1|CAA63436.1|  331|Homo sapiens Pax9 protein.                   27   6.0  

>BC001159-1|AAH01159.1|  341|Homo sapiens paired box gene 9 protein.
          Length = 341

 Score = 27.1 bits (57), Expect(2) = 6.0
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 569 IDAQVRXGEXPTGL*RYQAFXPGSSLVRSPVPTLPLTGYLS-AFSPSGSVA 718
           ++ + + G+ P GL    +F   SS+   P P   ++ Y++ + +PSG VA
Sbjct: 249 LEQEAKYGQAPNGLPAVGSFVSASSMAPYPTPA-QVSPYMTYSAAPSGYVA 298



 Score = 22.6 bits (46), Expect(2) = 6.0
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +2

Query: 497 PGTVKRPRCWRFSIGSAPLTSITKIDAQV 583
           PG+V  PR W  S     +  I  I  QV
Sbjct: 183 PGSVAMPRTWPSSHSVTDILGIRSITDQV 211


>AJ238381-1|CAB41533.1|  341|Homo sapiens pax9 protein protein.
          Length = 341

 Score = 27.1 bits (57), Expect(2) = 6.0
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 569 IDAQVRXGEXPTGL*RYQAFXPGSSLVRSPVPTLPLTGYLS-AFSPSGSVA 718
           ++ + + G+ P GL    +F   SS+   P P   ++ Y++ + +PSG VA
Sbjct: 249 LEQEAKYGQAPNGLPAVGSFVSASSMAPYPTPA-QVSPYMTYSAAPSGYVA 298



 Score = 22.6 bits (46), Expect(2) = 6.0
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +2

Query: 497 PGTVKRPRCWRFSIGSAPLTSITKIDAQV 583
           PG+V  PR W  S     +  I  I  QV
Sbjct: 183 PGSVAMPRTWPSSHSVTDILGIRSITDQV 211


>AB248958-1|BAE79273.1|  341|Homo sapiens paired box protein 9
           protein.
          Length = 341

 Score = 27.1 bits (57), Expect(2) = 6.0
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 569 IDAQVRXGEXPTGL*RYQAFXPGSSLVRSPVPTLPLTGYLS-AFSPSGSVA 718
           ++ + + G+ P GL    +F   SS+   P P   ++ Y++ + +PSG VA
Sbjct: 249 LEQEAKYGQAPNGLPAVGSFVSASSMAPYPTPA-QVSPYMTYSAAPSGYVA 298



 Score = 22.6 bits (46), Expect(2) = 6.0
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +2

Query: 497 PGTVKRPRCWRFSIGSAPLTSITKIDAQV 583
           PG+V  PR W  S     +  I  I  QV
Sbjct: 183 PGSVAMPRTWPSSHSVTDILGIRSITDQV 211


>X92850-1|CAA63436.1|  331|Homo sapiens Pax9 protein.
          Length = 331

 Score = 27.1 bits (57), Expect(2) = 6.0
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 569 IDAQVRXGEXPTGL*RYQAFXPGSSLVRSPVPTLPLTGYLS-AFSPSGSVA 718
           ++ + + G+ P GL    +F   SS+   P P   ++ Y++ + +PSG VA
Sbjct: 241 LEQEAKYGQAPNGLPAVGSFVSASSMAPYPTPA-QVSPYMTYSAAPSGYVA 290



 Score = 22.6 bits (46), Expect(2) = 6.0
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +2

Query: 497 PGTVKRPRCWRFSIGSAPLTSITKIDAQV 583
           PG+V  PR W  S     +  I  I  QV
Sbjct: 175 PGSVAMPRTWPSSHSVTDILGIRSITDQV 203


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,855,973
Number of Sequences: 237096
Number of extensions: 2229971
Number of successful extensions: 6330
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6329
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11992411152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)