Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_J19
         (984 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    30   3.3  
09_04_0258 - 16175258-16176069,16176111-16176414                       29   5.7  
04_04_0969 - 29787617-29787919,29788019-29788180,29788962-297890...    29   5.7  
06_03_1310 + 29238644-29240260                                         28   9.9  

>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = +1

Query: 226  GXXPAXPPPXG--GGXXPPXACTXXVGXXPPP 315
            G  PA PPP G  GG  PP A        PPP
Sbjct: 1158 GGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPP 1189


>09_04_0258 - 16175258-16176069,16176111-16176414
          Length = 371

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = -3

Query: 322 RAGGGGXXQXXPYRXXGXXXPPPRGG-GXP 236
           RAGGG      P R      PPP GG G P
Sbjct: 216 RAGGGASPPPLPVRVGASTPPPPHGGAGLP 245


>04_04_0969 -
           29787617-29787919,29788019-29788180,29788962-29789093,
           29789708-29789760,29790518-29791007
          Length = 379

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +3

Query: 243 PPPRGGGXXXPXXLYGXCWXXPPPPARV 326
           PPP GGG   P   YG     PP  A V
Sbjct: 15  PPPAGGGVMMPQHPYGAAPAMPPGSANV 42


>06_03_1310 + 29238644-29240260
          Length = 538

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 246 PPRGGGXXXPXX-LYGXCWXXPPPP 317
           PP+GGG   P   ++G  +  PPPP
Sbjct: 487 PPQGGGGKLPFPPVHGVAYSSPPPP 511


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,814,809
Number of Sequences: 37544
Number of extensions: 274106
Number of successful extensions: 635
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2870111300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)