Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_J19
         (984 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    30   2.9  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    30   2.9  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    30   2.9  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    29   3.8  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +3

Query: 234 PGXPPPRGGGXXXPXXLYGXCWXXPPPP 317
           PG  PP  GG   P    G C   PPPP
Sbjct: 748 PGGLPPISGGPPPPPPPPGGCPPPPPPP 775


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +3

Query: 234 PGXPPPRGGGXXXPXXLYGXCWXXPPPP 317
           PG  PP  GG   P    G C   PPPP
Sbjct: 748 PGGLPPISGGPPPPPPPPGGCPPPPPPP 775


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +3

Query: 234 PGXPPPRGGGXXXPXXLYGXCWXXPPPP 317
           PG  PP  GG   P    G C   PPPP
Sbjct: 331 PGGLPPISGGPPPPPPPPGGCPPPPPPP 358


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/61 (29%), Positives = 19/61 (31%)
 Frame = -2

Query: 404 FXXPXRGGPXNXXPPPVFXKKXXVXXHXSRGGGXXPTXXVQAXGGXXPPPXGGGXAGXXP 225
           F  P + GP     PP              G G  P     A G   PP  G G  G  P
Sbjct: 378 FAPPPQSGPPGAFAPPPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPP 437

Query: 224 P 222
           P
Sbjct: 438 P 438



 Score = 28.3 bits (60), Expect = 8.9
 Identities = 18/67 (26%), Positives = 20/67 (29%), Gaps = 2/67 (2%)
 Frame = -2

Query: 404 FXXPXRGGPXNXXPPPVFXKKXXVXXHXS--RGGGXXPTXXVQAXGGXXPPPXGGGXAGX 231
           F  P +G P    P   F        H    +  G  P     A G   PPP  G     
Sbjct: 331 FGAPPQGPPQGGPPQGSFGAPPPQQFHAPSPQSFGGPPPPVSSAPGNFAPPPQSGPPGAF 390

Query: 230 XPPXXXF 210
            PP   F
Sbjct: 391 APPPSAF 397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,908,898
Number of Sequences: 27780
Number of extensions: 145266
Number of successful extensions: 399
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2563248310
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)