Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_J17
(888 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.5
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.5
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.5
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 30 2.5
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 30 2.5
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 3.4
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 29 3.4
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 29 3.4
AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical ... 29 5.9
AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical ... 29 5.9
AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical ... 29 5.9
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 28 7.8
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 28 7.8
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 5/53 (9%)
Frame = +3
Query: 666 PPGFFPPXX-----KXPPXGXPXFFXXTPPPXXKXKKXXPPPXFXPXXXXKXG 809
PPG PP PP G P PPP PPP P K G
Sbjct: 731 PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +2
Query: 680 PPPXKXPPXGXPPLFXPHPPXXXXXKKXXXPP 775
PPP PP G PP P PP K PP
Sbjct: 758 PPPPPPPPGGCPP--PPPPPPPGGFKGGPPPP 787
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 5/53 (9%)
Frame = +3
Query: 666 PPGFFPPXX-----KXPPXGXPXFFXXTPPPXXKXKKXXPPPXFXPXXXXKXG 809
PPG PP PP G P PPP PPP P K G
Sbjct: 731 PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +2
Query: 680 PPPXKXPPXGXPPLFXPHPPXXXXXKKXXXPP 775
PPP PP G PP P PP K PP
Sbjct: 758 PPPPPPPPGGCPP--PPPPPPPGGFKGGPPPP 787
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 5/53 (9%)
Frame = +3
Query: 666 PPGFFPPXX-----KXPPXGXPXFFXXTPPPXXKXKKXXPPPXFXPXXXXKXG 809
PPG PP PP G P PPP PPP P K G
Sbjct: 314 PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 366
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +2
Query: 680 PPPXKXPPXGXPPLFXPHPPXXXXXKKXXXPP 775
PPP PP G PP P PP K PP
Sbjct: 341 PPPPPPPPGGCPP--PPPPPPPGGFKGGPPPP 370
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/56 (33%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Frame = +2
Query: 680 PPPXKXPPXGXPPLFXPHPP-XXXXXKKXXXPPXFXXXLXXKXGGGGXXFFXXPPP 844
PPP G PP F P PP + PP GG FF PPP
Sbjct: 306 PPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMF---RGGPYPPFFPPPPP 358
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/56 (33%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Frame = +2
Query: 680 PPPXKXPPXGXPPLFXPHPP-XXXXXKKXXXPPXFXXXLXXKXGGGGXXFFXXPPP 844
PPP G PP F P PP + PP GG FF PPP
Sbjct: 306 PPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMF---RGGPYPPFFPPPPP 358
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 29.5 bits (63), Expect = 3.4
Identities = 22/76 (28%), Positives = 23/76 (30%), Gaps = 2/76 (2%)
Frame = +3
Query: 666 PPGFFPPXXKXPPXGXPXFFXXTPPPXXKXKKXXPPPXFXPXXXXKXGGXXXFF--FXXP 839
PPG F P P G P F + P PP F P GG F P
Sbjct: 151 PPGPFDPSGAPPSGGPPGLFDPSGAP----PSGGPPGPFGPSGAPPSGGPPGPFNPSEAP 206
Query: 840 PXXGXFSXXXXGXXPP 887
P G PP
Sbjct: 207 PSGGPTGPFDPSGAPP 222
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 666 PPGFFPPXXKXPPXGXPXFFXXTPPPXXKXKKXXPPP 776
PPG +PP + PP + PPP + PPP
Sbjct: 702 PPGGYPPQQQRPPYQAQP-YPGPPPPQQQRGYGYPPP 737
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 666 PPGFFPPXXKXPPXGXPXFFXXTPPPXXKXKKXXPPP 776
PPG +PP + PP + PPP + PPP
Sbjct: 702 PPGGYPPQQQRPPYQAQP-YPGPPPPQQQRGYGYPPP 737
>AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical
protein H28G03.2c protein.
Length = 275
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 666 PPGFFPPXXKXPPXGXPXFFXXTPPP 743
PPG PP PP G P PPP
Sbjct: 84 PPGMGPPPFMPPPIGMPPPPLGMPPP 109
>AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical
protein H28G03.2b protein.
Length = 298
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 666 PPGFFPPXXKXPPXGXPXFFXXTPPP 743
PPG PP PP G P PPP
Sbjct: 107 PPGMGPPPFMPPPIGMPPPPLGMPPP 132
>AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical
protein H28G03.2a protein.
Length = 548
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 666 PPGFFPPXXKXPPXGXPXFFXXTPPP 743
PPG PP PP G P PPP
Sbjct: 357 PPGMGPPPFMPPPIGMPPPPLGMPPP 382
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = -3
Query: 775 GGGXXFFXXXXGGGVXXKKXGXPXGGXFXXGGKNPGGXFXKXPGGGXPPPXXXGG 611
GGG GGG G GG GG + GG + P GG GG
Sbjct: 188 GGGCGGGGSSGGGGYAVAPSG---GGGCGGGGSSGGGGYASAPSGGGGYATSGGG 239
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/55 (32%), Positives = 22/55 (40%)
Frame = -3
Query: 775 GGGXXFFXXXXGGGVXXKKXGXPXGGXFXXGGKNPGGXFXKXPGGGXPPPXXXGG 611
GGG + GGG G GG + GG + GG + GGG GG
Sbjct: 229 GGGG--YATSGGGGSGGYATGGSSGGGYSSGGSS-GGGYSTGGGGGYAGGGGGGG 280
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = -3
Query: 775 GGGXXFFXXXXGGGVXXKKXGXPXGGXFXXGGKNPGGXFXKXPGGGXPPPXXXGG 611
GGG GGG G GG GG + GG + P GG GG
Sbjct: 188 GGGCGGGGSSGGGGYAVAPSG---GGGCGGGGSSGGGGYASAPSGGGGYATSGGG 239
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/55 (32%), Positives = 22/55 (40%)
Frame = -3
Query: 775 GGGXXFFXXXXGGGVXXKKXGXPXGGXFXXGGKNPGGXFXKXPGGGXPPPXXXGG 611
GGG + GGG G GG + GG + GG + GGG GG
Sbjct: 229 GGGG--YATSGGGGSGGYATGGSSGGGYSSGGSS-GGGYSTGGGGGYAGGGGGGG 280
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/37 (37%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Frame = +2
Query: 668 PXVFPPPXKXPPXGX-PPLFXPHPPXXXXXKKXXXPP 775
P PPP PP PP F P PP PP
Sbjct: 36 PMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPP 72
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,197,808
Number of Sequences: 27780
Number of extensions: 316134
Number of successful extensions: 1203
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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