Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_J16
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.4  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   6.4  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    26   8.4  
SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom...    26   8.4  

>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -2

Query: 372 EIYQTYSHVLKYHVH*VCINHINFYFLSFVFNIVSTEHCAKIV 244
           E+Y  Y H+++ H +   +  +   FLS    +   E C K++
Sbjct: 361 EVYSAYLHIIRDHYNLSDLADVQAIFLSRFILLRKKEDCKKLL 403


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
 Frame = +1

Query: 400 ELSIAANFLQITEL----IKKIEYCLDLQLSVSNWMETMIIAENSSYTKL-EQLSAAFGL 564
           EL +A   +  T L    +KK+++ LDL + + N + T  +    +++ L + L      
Sbjct: 327 ELLVATRHILSTNLKSLFVKKLDFLLDLNILLGNGVGTQKLLRPLAFSTLADLLHHVRDE 386

Query: 565 LNFKQMKKE---YILNIHRL 615
           LN  Q++K    Y  N+H L
Sbjct: 387 LNETQIRKSIMIYSTNMHDL 406


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 469 LQLSVSNWMETMIIAENSSYTKLEQLSAAFGLL 567
           LQL    WM T+ IA  +S T+L  +  A+  +
Sbjct: 183 LQLIARTWMNTLKIASQASKTELLIVGTAYACM 215


>SPBC428.13c |mob1||protein kinase regulator
           Mob1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = -2

Query: 402 FSNSCQ*VFREIYQTYSHVLKYHVH*VCI----NHINFYFLSFVF 280
           F    Q +FR +++ Y+H+   H H +      +++N  F  FVF
Sbjct: 142 FRKVIQQIFRRLFRIYAHIYCSHFHVMVAMELESYLNTSFKHFVF 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,396
Number of Sequences: 5004
Number of extensions: 58481
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)