Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_J15
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    28   2.1  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   3.7  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    27   4.9  
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    26   6.4  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   8.5  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    26   8.5  

>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 247 RELYPEKGATSGGIDSWLSV-WSNGILLENVDESGSRVARFFPISSLH 387
           R L+    + S G  +W  V W N +L  ++D+  S    FFP   LH
Sbjct: 186 RRLFILSYSISYGTLAWSVVAWRNSLLFHSIDKITSLFIHFFPPLVLH 233


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 290  IRGYRSGRTVSCWRTWMKVDRGW-PGFSRFRV 382
            IR YR  +    WR W+  D GW  G S+ +V
Sbjct: 1297 IRDYRQSK----WREWLNSDEGWTQGLSKDKV 1324


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -3

Query: 404 RTAAQ*CKLEIGKNLATRD-PLSSTFSNKIPFDQTDSHESMPPLVAPFSGYSSRKG 240
           + AA   K ++  N   ++ PL  + ++   ++ TDS ES  P+V P     S  G
Sbjct: 511 KLAASALKAQLVSNETLQNVPLEDSIASSSAYEDTDSIESSTPVVHPIDTKVSNVG 566


>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
 Frame = +1

Query: 181 LYLGSAVPQQSKDGLQGIQEPLRELYPEKG-----ATSGGIDSWLSVWSNGILLENVDES 345
           +YLGS     +K GL+ + + L   Y   G        G I  W   W      +   + 
Sbjct: 138 IYLGSPAYSAAKAGLENLTKALAVRYGPLGIRVNVCAPGTI--WSPAWDE--RFKKHPDV 193

Query: 346 GSRVARFFPISSLHYCAAVRRVIV 417
           G R+ R++P+  L     V R ++
Sbjct: 194 GDRMKRWYPVGRLGTPEDVARAVI 217


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 393 RCGAPCDCRRWAAIFTSRFALRSGTSAATPALIRGGFAS 509
           R G+  D + W      ++A R+G + ++P    GG +S
Sbjct: 276 RLGSEADAKAWLDSVAQKYAARNGVTLSSPT-AEGGSSS 313


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 550 CRREAAANALVRCCFHAYADSSYAKRLEAE 639
           C R A A+ ++ CC   + D +  K  E +
Sbjct: 84  CHRAALAHQILNCCIEIFFDEALKKAKELD 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,306,733
Number of Sequences: 5004
Number of extensions: 66002
Number of successful extensions: 181
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)