Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_J15
(910 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 170 1e-42
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 170 1e-42
AC006677-5|AAF39950.1| 280|Caenorhabditis elegans Hypothetical ... 31 0.86
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ... 30 2.0
U80840-7|AAB37928.2| 300|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical pr... 29 6.1
Z32840-5|CAD88215.1| 509|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z32840-4|CAA83680.1| 460|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z32840-3|CAB63430.2| 457|Caenorhabditis elegans Hypothetical pr... 28 8.0
AF000261-1|AAB52922.1| 505|Caenorhabditis elegans Hypothetical ... 28 8.0
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 170 bits (414), Expect = 1e-42
Identities = 84/162 (51%), Positives = 104/162 (64%), Gaps = 7/162 (4%)
Frame = +1
Query: 160 PICRCRVLYLGSAVPQQSKDGLQGIQEPLRELYP-EKGATSGGIDSWLSVWSNGILLENV 336
P+CRCRVLY+GS+VP +KDGLQGIQ+PL+E YP ++ + GIDSWLSVWSNG+LLE +
Sbjct: 4 PLCRCRVLYIGSSVPTITKDGLQGIQQPLKERYPIQESPDTRGIDSWLSVWSNGVLLEYI 63
Query: 337 DESGSRVARFFPISSLHYCAAVRRVIVE------GGPRFLPLDSXXXXXXXXXXXXXXXX 498
+ FFPI +LHYCAAVR V VE GG +F+PLDS
Sbjct: 64 EGEKKTETVFFPIITLHYCAAVRYVNVEGFKVGGGGEQFMPLDSPFANIPNSPHPPIFAA 123
Query: 499 XXXXTQGIKVLECHAFICRREAAANALVRCCFHAYADSSYAK 624
T G+KVLECH FIC AANALVRC HAY ++ + +
Sbjct: 124 IFRRTTGVKVLECHGFICTNVKAANALVRCMVHAYTETMHLR 165
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 170 bits (414), Expect = 1e-42
Identities = 84/162 (51%), Positives = 104/162 (64%), Gaps = 7/162 (4%)
Frame = +1
Query: 160 PICRCRVLYLGSAVPQQSKDGLQGIQEPLRELYP-EKGATSGGIDSWLSVWSNGILLENV 336
P+CRCRVLY+GS+VP +KDGLQGIQ+PL+E YP ++ + GIDSWLSVWSNG+LLE +
Sbjct: 4 PLCRCRVLYIGSSVPTITKDGLQGIQQPLKERYPIQESPDTRGIDSWLSVWSNGVLLEYI 63
Query: 337 DESGSRVARFFPISSLHYCAAVRRVIVE------GGPRFLPLDSXXXXXXXXXXXXXXXX 498
+ FFPI +LHYCAAVR V VE GG +F+PLDS
Sbjct: 64 EGEKKTETVFFPIITLHYCAAVRYVNVEGFKVGGGGEQFMPLDSPFANIPNSPHPPIFAA 123
Query: 499 XXXXTQGIKVLECHAFICRREAAANALVRCCFHAYADSSYAK 624
T G+KVLECH FIC AANALVRC HAY ++ + +
Sbjct: 124 IFRRTTGVKVLECHGFICTNVKAANALVRCMVHAYTETMHLR 165
>AC006677-5|AAF39950.1| 280|Caenorhabditis elegans Hypothetical
protein R05D8.7 protein.
Length = 280
Score = 31.5 bits (68), Expect = 0.86
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +3
Query: 348 IAGGQVFPDFEFALLRCGAPCDCRRWAAIFTSRFALRSGTSAATPALIRGGFASDPGHQS 527
+AG Q PDF + + A R AI ++F +R ++ +P ++ GF + G
Sbjct: 150 VAGPQAQPDFLYYAIAKAALDQYTRSTAIDLAKFGIR--VNSVSPGMVETGFTNAMGMPD 207
Query: 528 SRVSRFY 548
+FY
Sbjct: 208 QASQKFY 214
>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
potassium channelsprotein 2 protein.
Length = 1564
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 200 CRNRARTAYRASRNLCANCIRKRVRPVVA*IRGYRSGRTVSCWRT 334
CR R AYR ++ C R + IR YR R SCW+T
Sbjct: 1426 CRGVLRGAYRVGKSRCGKIQRVDI------IRVYRVTRHFSCWKT 1464
>U80840-7|AAB37928.2| 300|Caenorhabditis elegans Hypothetical
protein F08D12.3b protein.
Length = 300
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 617 MRKDWRQSVRLLSYLRTPXXNWRCTTXMKIIKCGSVXPNVTTSAXXFRTRSG 772
MR++ + VRLL L + T + I C +V P T+SA ++ +G
Sbjct: 1 MRRELTRRVRLLKSLDLVKFSIMSRTFLTIFFCSAVAPGATSSASTCKSPTG 52
>Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical
protein F09C3.1 protein.
Length = 1391
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 184 YLGSAVPQQSKDGLQGIQEPLRELYPEKGATS 279
Y+ ++ QQ DGLQG +EPL +++ + S
Sbjct: 249 YVEDSLAQQYLDGLQGEEEPLAKIFVQSVVNS 280
>Z32840-5|CAD88215.1| 509|Caenorhabditis elegans Hypothetical
protein C07G2.2c protein.
Length = 509
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -1
Query: 235 GCPVGRPCSVAAPRSRGRARGTDISASIPFRHHTI 131
G PVGRP + R RGR R T R +TI
Sbjct: 363 GNPVGRPQNGTPGRGRGRGRSTTADMQPDERRNTI 397
>Z32840-4|CAA83680.1| 460|Caenorhabditis elegans Hypothetical
protein C07G2.2b protein.
Length = 460
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -1
Query: 235 GCPVGRPCSVAAPRSRGRARGTDISASIPFRHHTI 131
G PVGRP + R RGR R T R +TI
Sbjct: 314 GNPVGRPQNGTPGRGRGRGRSTTADMQPDERRNTI 348
>Z32840-3|CAB63430.2| 457|Caenorhabditis elegans Hypothetical
protein C07G2.2a protein.
Length = 457
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -1
Query: 235 GCPVGRPCSVAAPRSRGRARGTDISASIPFRHHTI 131
G PVGRP + R RGR R T R +TI
Sbjct: 314 GNPVGRPQNGTPGRGRGRGRSTTADMQPDERRNTI 348
>AF000261-1|AAB52922.1| 505|Caenorhabditis elegans Hypothetical
protein F19B10.11 protein.
Length = 505
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 362 LATRDPLSSTFSNKIPFDQTDSHESMPPLVAP 267
+ +RDP+ F IPF+ ++ PLV P
Sbjct: 351 VVSRDPIDDEFEEIIPFNPVSDIPNVKPLVVP 382
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,095,766
Number of Sequences: 27780
Number of extensions: 407191
Number of successful extensions: 1145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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