Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_J14
         (1001 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.45 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   4.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   4.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.2  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.3 bits (65), Expect = 0.45
 Identities = 15/46 (32%), Positives = 16/46 (34%)
 Frame = +2

Query: 581  SXXXPKQPXPXXXPXXXXXPPPPXXPXXXAXXXQXPXPXLHLXXAP 718
            S   P+   P   P     PPPP  P   A     P P L    AP
Sbjct: 1696 SAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 15/50 (30%), Positives = 18/50 (36%)
 Frame = +2

Query: 593 PKQPXPXXXPXXXXXPPPPXXPXXXAXXXQXPXPXLHLXXAPXXLXXPXP 742
           PKQ  P   P     PPPP  P       Q P P  ++      +  P P
Sbjct: 229 PKQADPLPAPPP---PPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPP 275


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 19/81 (23%), Positives = 22/81 (27%)
 Frame = +2

Query: 446 PPAXXXXXXAXPAPXPXAXLPTXXPXAPXSTXTXPGXXPALXFFFSXXXPKQPXPXXXPX 625
           PP       + P P P +  P      P  +   P   PA         P  P     P 
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLP-SAVPPM 197

Query: 626 XXXXPPPPXXPXXXAXXXQXP 688
               PPPP      A     P
Sbjct: 198 PPKVPPPPLSQAPVANTSSRP 218


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 30/143 (20%), Positives = 37/143 (25%), Gaps = 7/143 (4%)
 Frame = +3

Query: 594  PNNRXPXXPXXXXXPPXHPXXRXGXPXAXNXPXRXYTXXKPXXG-SXXPXPTXPPXXPLX 770
            P++  P  P     PP       G P             KP       P P+  P  P  
Sbjct: 1069 PSSEIPSIPAPSGAPPVPAPS--GIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKP 1126

Query: 771  GX------LXGGXPPXPSXGXPXXXXPXPALXVXVXPPAXXPXPRXAXWRXXXXAPPXTX 932
                    +  G PP P         P P+    V  P+    P  A        P    
Sbjct: 1127 SVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAA 1186

Query: 933  LAXXXPGXRGXPPTRRXXVXXPP 1001
                 P     PP  +  V  PP
Sbjct: 1187 GVPPVPPPSEAPPVPKPSVGVPP 1209


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 13/43 (30%), Positives = 15/43 (34%)
 Frame = +3

Query: 792 PPXPSXGXPXXXXPXPALXVXVXPPAXXPXPRXAXWRXXXXAP 920
           PP P  G P    P P +     PP   P P  +       AP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,767,233
Number of Sequences: 5004
Number of extensions: 19438
Number of successful extensions: 45
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 519268360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)