Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_J13
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    31   0.22 
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    27   2.7  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   2.7  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    27   2.7  
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo...    27   4.7  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      27   4.7  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    26   6.3  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   8.3  

>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 99  FTPTRLIYECDFSRTGTIIANLGGLFNISQIYKVRNTN 212
           F P ++  EC+  +   +IA   GL+N+S+ + +RNT+
Sbjct: 18  FRPDKITSECNTPQQQNVIAE--GLYNVSEPFPIRNTD 53


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +3

Query: 117 IYECDFSRTGTIIANLGGLFNISQIYKVRNTNNC*VYCFRRYKNTRAKKLPSRKPYVFS 293
           +   DFS TG    + G      +IY VR  ++  VY  +R +   A K      Y+FS
Sbjct: 276 VMSVDFSPTGQEFVS-GSYDKTIRIYNVREGHSRDVYHTKRMQRVTAVKFSMDAQYIFS 333


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +3

Query: 606  NCRKNGTLTRXPTPDYVDKAHV---QLKTVKDEKAEPKNAXRNFF 731
            NC+K   L++  T     K H+    LK V  E + P+N+ R FF
Sbjct: 3004 NCKKEIHLSKVKTVKLQSKEHIFLQLLKGVNFEFSVPENSVRTFF 3048


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 20/66 (30%), Positives = 33/66 (50%)
 Frame = +3

Query: 249  TRAKKLPSRKPYVFSRLTFMIISNVFLVCL*ATLKMKRINKSKPLVIIQCYEDRQPTLPL 428
            T+  K+   K Y  S+    +I+N  +  +  +LK K  +  +     QC ED++P + L
Sbjct: 1105 TQKDKVEFEKNYEKSKKGPDVIANALVGGIPLSLKTKEDSLYELSKFSQCGEDQRP-MVL 1163

Query: 429  KKTDHL 446
            K  DHL
Sbjct: 1164 KDPDHL 1169


>SPAC23G3.05c |||regulator of G-protein signaling
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 343

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 509 RWWILCSFAFGYWRIIC 459
           R W L  FAFG++ +IC
Sbjct: 263 RVWTLLPFAFGFYNLIC 279


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 375 KPLVIIQCYEDRQPTLPLKKTDHLPFEATN 464
           +PLV   C EDRQ T   K+   LP + ++
Sbjct: 160 QPLVDHDCIEDRQKTFASKQLPTLPLQKSS 189


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +2

Query: 245 KYASKK---ITFTKAICVFAINLYDNFKRFPRVFISHVK--NEEN*QIETF 382
           KY S++   +  TKAI  +  NL     +   +++ H+K  NE   ++E F
Sbjct: 43  KYESQQKLLLKLTKAITEYLSNLKPQLSKQENIYVKHIKSSNEAKTELEIF 93


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 371 IETFGHHPVLRRQTTYFAAQENR 439
           +E FG+HP   RQ + FA+ ++R
Sbjct: 270 VEAFGNHPPWWRQLSNFASVQDR 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,090,304
Number of Sequences: 5004
Number of extensions: 61071
Number of successful extensions: 185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)